[ecco-support] Problem installing ecco_v4_py

Tue Aug 6 08:42:40 EDT 2019

Dear Ecco team,

I am having troubles installing ecco_v4_py in my conda environement 
using pip. I paste below the (impressive!) error message I got. I 
thought you may have encountered this problem before, and might be able 
to help.

Many thanks in advance,

Damien

(pydam36) bash-3.2$ pip install ecco_v4_py --no-cache-dir
Collecting ecco_v4_py
   Downloading 
https://files.pythonhosted.org/packages/0e/86/b1638f08f0bfc8e0f09fedf0196b94aa33997d8c5effb1cbb375e7f40e21/ecco_v4_py-1.0.10.tar.gz 
(56kB)
      |████████████████████████████████| 61kB 2.4MB/s
Requirement already satisfied: cython in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.29.13)
Requirement already satisfied: shapely in ./lib/python3.7/site-packages 
(from ecco_v4_py) (1.6.4.post1)
Requirement already satisfied: proj in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.1.0)
Requirement already satisfied: six in ./lib/python3.7/site-packages 
(from ecco_v4_py) (1.12.0)
Requirement already satisfied: dask[complete] in 
./lib/python3.7/site-packages (from ecco_v4_py) (2.0.0)
Requirement already satisfied: datetime in ./lib/python3.7/site-packages 
(from ecco_v4_py) (4.3)
Requirement already satisfied: python-dateutil in 
./lib/python3.7/site-packages (from ecco_v4_py) (2.8.0)
Requirement already satisfied: matplotlib in 
./lib/python3.7/site-packages (from ecco_v4_py) (3.1.0)
Requirement already satisfied: numpy in ./lib/python3.7/site-packages 
(from ecco_v4_py) (1.16.4)
Collecting pyresample (from ecco_v4_py)
   Downloading 
https://files.pythonhosted.org/packages/28/5d/39c566fa3a0b39b979bc24ce33445b0b0ba8ec570cf331b3de0064ba8a61/pyresample-1.12.3.tar.gz 
(4.1MB)
      |████████████████████████████████| 4.1MB 4.4MB/s
Requirement already satisfied: xarray in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.12.1)
Requirement already satisfied: xmitgcm in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.3.0)
Requirement already satisfied: pyyaml in ./lib/python3.7/site-packages 
(from ecco_v4_py) (5.1.1)
Requirement already satisfied: pyproj in ./lib/python3.7/site-packages 
(from ecco_v4_py) (1.9.6)
Requirement already satisfied: pykdtree in ./lib/python3.7/site-packages 
(from ecco_v4_py) (1.3.1)
Requirement already satisfied: cartopy in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.17.0)
Requirement already satisfied: xgcm in ./lib/python3.7/site-packages 
(from ecco_v4_py) (0.2.0)
Requirement already satisfied: arrow>=0.4.4 in 
./lib/python3.7/site-packages (from proj->ecco_v4_py) (0.14.4)
Requirement already satisfied: click>=3.3 in 
./lib/python3.7/site-packages (from proj->ecco_v4_py) (7.0)
Requirement already satisfied: bokeh>=1.0.0; extra == "complete" in 
./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (1.2.0)
Requirement already satisfied: partd>=0.3.10; extra == "complete" in 
./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (1.0.0)
Requirement already satisfied: cloudpickle>=0.2.1; extra == "complete" 
in ./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (1.2.1)
Requirement already satisfied: distributed>=2.0; extra == "complete" in 
./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (2.0.1)
Requirement already satisfied: pandas>=0.21.0; extra == "complete" in 
./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (0.24.2)
Requirement already satisfied: toolz>=0.7.3; extra == "complete" in 
./lib/python3.7/site-packages (from dask[complete]->ecco_v4_py) (0.9.0)
Requirement already satisfied: pytz in ./lib/python3.7/site-packages 
(from datetime->ecco_v4_py) (2019.1)
Requirement already satisfied: zope.interface in 
./lib/python3.7/site-packages (from datetime->ecco_v4_py) (4.6.0)
Requirement already satisfied: cycler>=0.10 in 
./lib/python3.7/site-packages (from matplotlib->ecco_v4_py) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in 
./lib/python3.7/site-packages (from matplotlib->ecco_v4_py) (1.1.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 
in ./lib/python3.7/site-packages (from matplotlib->ecco_v4_py) (2.4.0)
Requirement already satisfied: setuptools>=3.2 in 
./lib/python3.7/site-packages (from pyresample->ecco_v4_py) (41.0.1)
Requirement already satisfied: configobj in 
./lib/python3.7/site-packages (from pyresample->ecco_v4_py) (5.0.6)
Requirement already satisfied: pyshp>=1.1.4 in 
./lib/python3.7/site-packages (from cartopy->ecco_v4_py) (2.1.0)
Requirement already satisfied: docrep in ./lib/python3.7/site-packages 
(from xgcm->ecco_v4_py) (0.2.7)
Requirement already satisfied: future in ./lib/python3.7/site-packages 
(from xgcm->ecco_v4_py) (0.17.1)
Requirement already satisfied: packaging>=16.8 in 
./lib/python3.7/site-packages (from bokeh>=1.0.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (19.0)
Requirement already satisfied: tornado>=4.3 in 
./lib/python3.7/site-packages (from bokeh>=1.0.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (6.0.3)
Requirement already satisfied: pillow>=4.0 in 
./lib/python3.7/site-packages (from bokeh>=1.0.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (6.0.0)
Requirement already satisfied: Jinja2>=2.7 in 
./lib/python3.7/site-packages (from bokeh>=1.0.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (2.10.1)
Requirement already satisfied: locket in ./lib/python3.7/site-packages 
(from partd>=0.3.10; extra == "complete"->dask[complete]->ecco_v4_py) 
(0.2.0)
Requirement already satisfied: psutil>=5.0 in 
./lib/python3.7/site-packages (from distributed>=2.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (5.6.3)
Requirement already satisfied: zict>=0.1.3 in 
./lib/python3.7/site-packages (from distributed>=2.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (1.0.0)
Requirement already satisfied: sortedcontainers!=2.0.0,!=2.0.1 in 
./lib/python3.7/site-packages (from distributed>=2.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (2.1.0)
Requirement already satisfied: msgpack in ./lib/python3.7/site-packages 
(from distributed>=2.0; extra == "complete"->dask[complete]->ecco_v4_py) 
(0.6.1)
Requirement already satisfied: tblib in ./lib/python3.7/site-packages 
(from distributed>=2.0; extra == "complete"->dask[complete]->ecco_v4_py) 
(1.4.0)
Requirement already satisfied: MarkupSafe>=0.23 in 
./lib/python3.7/site-packages (from Jinja2>=2.7->bokeh>=1.0.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (1.1.1)
Requirement already satisfied: heapdict in ./lib/python3.7/site-packages 
(from zict>=0.1.3->distributed>=2.0; extra == 
"complete"->dask[complete]->ecco_v4_py) (1.0.0)
Building wheels for collected packages: ecco-v4-py, pyresample
   Building wheel for ecco-v4-py (setup.py) ... done
   Stored in directory: 
/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-ephem-wheel-cache-dujj8zwc/wheels/25/44/09/2c5d87a0317c8e1729b779d6d91a80602adf04c8508187cb41
   Building wheel for pyresample (setup.py) ... error
   ERROR: Complete output from command 
/Users/ddesbruy/anaconda2/envs/pydam36/bin/python -u -c 'import 
setuptools, 
tokenize;__file__='"'"'/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-install-f3qqrj79/pyresample/setup.py'"'"';f=getattr(tokenize, 
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', 
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' 
bdist_wheel -d 
/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-wheel-xa_1l7dy 
--python-tag cp37:
   ERROR: Cython will not be used. Use environment variable 
'USE_CYTHON=True' to use it
   running bdist_wheel
   running build
   running build_py
   creating build
   creating build/lib.macosx-10.9-x86_64-3.7
   creating build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/boundary.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/grid.py -> build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/plot.py -> build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/version.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/_spatial_mp.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/area_config.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/spherical_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/_cartopy.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/_multi_proc.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/kd_tree.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/geo_filter.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/spherical.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/data_reduce.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   copying pyresample/image.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
   creating build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_ewa_ll2cr.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_spherical.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_plot.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_utils.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_bilinear.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_ewa_fornav.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_grid.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_kd_tree.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_image.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_swath.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_spatial_mp.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_data_reduce.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_spherical_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/utils.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   copying pyresample/test/test_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
   creating build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
   copying pyresample/bilinear/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
   copying pyresample/bilinear/xarr.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
   creating build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
   copying pyresample/utils/_rasterio.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
   copying pyresample/utils/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
   copying pyresample/utils/_proj4.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
   creating build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa
   copying pyresample/ewa/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa
   running build_ext
   building 'pyresample.ewa._ll2cr' extension
   creating build/temp.macosx-10.9-x86_64-3.7
   creating build/temp.macosx-10.9-x86_64-3.7/pyresample
   creating build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa
   x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_ll2cr.c -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.o -O3 
-Wno-unused-function
   In file included from pyresample/ewa/_ll2cr.c:611:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
   #warning "Using deprecated NumPy API, disable it with " \
    ^
   1 warning generated.
   x86_64-apple-darwin13.4.0-clang -bundle -undefined dynamic_lookup 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -flto -Wl,-export_dynamic 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -Wl,-pie 
-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 
-mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE 
-fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 -arch x86_64 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.o -o 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.cpython-37m-darwin.so
   ld: warning: directory not found for option '-L/opt/local/lib'
   ld: warning: directory not found for option 
'-L/opt/local/lib/perl5/5.18/darwin-thread-multi-2level/File'
   ld: warning: directory not found for option '-L/opt/local/lib/perl5/5.18'
   ld: warning: -pie being ignored. It is only used when linking a main 
executable
   ld: warning: ignoring file 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, 
file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 
0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not 
the architecture being linked (x86_64): 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
   building 'pyresample.ewa._fornav' extension
   x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_fornav.cpp -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.o -O3 
-Wno-unused-function
   In file included from pyresample/ewa/_fornav.cpp:631:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
   #warning "Using deprecated NumPy API, disable it with " \
    ^
   1 warning generated.
   x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_fornav_templates.cpp -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav_templates.o -O3 
-Wno-unused-function
   In file included from pyresample/ewa/_fornav_templates.cpp:4:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
   In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
   #warning "Using deprecated NumPy API, disable it with " \
    ^
   1 warning generated.
   x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -flto -Wl,-export_dynamic 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -Wl,-pie 
-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 
-mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE 
-fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 -arch x86_64 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav_templates.o -o 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.cpython-37m-darwin.so
   unable to execute 'x86_64-apple-darwin13.4.0-clang++': No such file 
or directory
   error: command 'x86_64-apple-darwin13.4.0-clang++' failed with exit 
status 1
   ----------------------------------------
   ERROR: Failed building wheel for pyresample
   Running setup.py clean for pyresample
Successfully built ecco-v4-py
Failed to build pyresample
Installing collected packages: pyresample, ecco-v4-py
   Running setup.py install for pyresample ... error
     ERROR: Complete output from command 
/Users/ddesbruy/anaconda2/envs/pydam36/bin/python -u -c 'import 
setuptools, 
tokenize;__file__='"'"'/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-install-f3qqrj79/pyresample/setup.py'"'"';f=getattr(tokenize, 
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', 
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' 
install --record 
/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-record-8i3k0ijm/install-record.txt 
--single-version-externally-managed --compile:
     ERROR: Cython will not be used. Use environment variable 
'USE_CYTHON=True' to use it
     running install
     running build
     running build_py
     creating build
     creating build/lib.macosx-10.9-x86_64-3.7
     creating build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/boundary.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/grid.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/plot.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/version.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/_spatial_mp.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/area_config.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/spherical_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/_cartopy.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/_multi_proc.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/kd_tree.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/geo_filter.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/spherical.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/data_reduce.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     copying pyresample/image.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample
     creating build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_ewa_ll2cr.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_spherical.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_plot.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_utils.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_bilinear.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_ewa_fornav.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_grid.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_kd_tree.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_image.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_swath.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_spatial_mp.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_data_reduce.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_spherical_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/utils.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     copying pyresample/test/test_geometry.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/test
     creating build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
     copying pyresample/bilinear/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
     copying pyresample/bilinear/xarr.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/bilinear
     creating build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
     copying pyresample/utils/_rasterio.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
     copying pyresample/utils/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
     copying pyresample/utils/_proj4.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/utils
     creating build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa
     copying pyresample/ewa/__init__.py -> 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa
     running build_ext
     building 'pyresample.ewa._ll2cr' extension
     creating build/temp.macosx-10.9-x86_64-3.7
     creating build/temp.macosx-10.9-x86_64-3.7/pyresample
     creating build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa
     x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_ll2cr.c -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.o -O3 
-Wno-unused-function
     In file included from pyresample/ewa/_ll2cr.c:611:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
     #warning "Using deprecated NumPy API, disable it with " \
      ^
     1 warning generated.
     x86_64-apple-darwin13.4.0-clang -bundle -undefined dynamic_lookup 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -flto -Wl,-export_dynamic 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -Wl,-pie 
-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 
-mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE 
-fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 -arch x86_64 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.o -o 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa/_ll2cr.cpython-37m-darwin.so
     ld: warning: directory not found for option '-L/opt/local/lib'
     ld: warning: directory not found for option 
'-L/opt/local/lib/perl5/5.18/darwin-thread-multi-2level/File'
     ld: warning: directory not found for option 
'-L/opt/local/lib/perl5/5.18'
     ld: warning: -pie being ignored. It is only used when linking a 
main executable
     ld: warning: ignoring file 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, 
file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 
0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not 
the architecture being linked (x86_64): 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
     building 'pyresample.ewa._fornav' extension
     x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_fornav.cpp -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.o -O3 
-Wno-unused-function
     In file included from pyresample/ewa/_fornav.cpp:631:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
     #warning "Using deprecated NumPy API, disable it with " \
      ^
     1 warning generated.
     x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall 
-Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize 
-fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 
-I/Users/ddesbruy/anaconda2/envs/pydam36/include/python3.7m 
-I/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include 
-c pyresample/ewa/_fornav_templates.cpp -o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav_templates.o -O3 
-Wno-unused-function
     In file included from pyresample/ewa/_fornav_templates.cpp:4:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
     In file included from 
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824:
/Users/ddesbruy/anaconda2/envs/pydam36/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: 
warning: "Using deprecated NumPy API, disable it with " "#define 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
     #warning "Using deprecated NumPy API, disable it with " \
      ^
     1 warning generated.
     x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -flto -Wl,-export_dynamic 
-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs 
-Wl,-rpath,/Users/ddesbruy/anaconda2/envs/pydam36/lib 
-L/Users/ddesbruy/anaconda2/envs/pydam36/lib -Wl,-pie 
-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 
-mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE 
-fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 
-mmacosx-version-min=10.9 -arch x86_64 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.o 
build/temp.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav_templates.o -o 
build/lib.macosx-10.9-x86_64-3.7/pyresample/ewa/_fornav.cpython-37m-darwin.so
     unable to execute 'x86_64-apple-darwin13.4.0-clang++': No such file 
or directory
     error: command 'x86_64-apple-darwin13.4.0-clang++' failed with exit 
status 1
     ----------------------------------------
ERROR: Command "/Users/ddesbruy/anaconda2/envs/pydam36/bin/python -u -c 
'import setuptools, 
tokenize;__file__='"'"'/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-install-f3qqrj79/pyresample/setup.py'"'"';f=getattr(tokenize, 
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', 
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' 
install --record 
/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-record-8i3k0ijm/install-record.txt 
--single-version-externally-managed --compile" failed with error code 1 
in 
/private/var/folders/ty/lmm2w9f12yg_v5jwmgyjqdsw00g9t7/T/pip-install-f3qqrj79/pyresample/

-- 
-------------------------------------------------------
Damien Desbruyères
Email: damien.desbruyeres at ifremer.fr
Phone:  +33 (0)2 29 00 85 05
Laboratoire d'Océanographie Physique et Spatiale (LOPS)
IFREMER
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané
-------------------------------------------------------

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