[StarCluster] problem with arguments passed to plugin

[Dan Tenenbaum]

Looks like you can't have any uppercase letters in your argument names.
Dan


On Sun, Oct 31, 2010 at 2:56 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:

> Hi, I am getting:
>
> PluginError: Not enough settings provided for plugin shortreadplugin
>
> where I don't think I should.
>
> My config:
>
> [plugin shortreadplugin]
> SETUP_CLASS = bioconductor.ShortReadPlugin
> email=my at email.address
> job_name=myfirsttest
> output_bucket=my-bucket-name
> access_key=my_access_key
> secret_key=my_secret_key
> dirPath=testsolexaexportfiles
> _type=SolexaExport
> pattern=s_3_export.txt
> Lpattern=None
> Rpattern=None
> param=None
>
>
> My plugin constructor signature line:
>      def __init__(self, email, job_name, output_bucket, access_key,
> secret_key, dirPath, _type, pattern, Lpattern, Rpattern, param):
>
> There are 11 parameters passed to the plugin in the config file (excepting
> SETUP_CLASS). And there are 11 variables expected in the plugin constructor
> (excepting self).
>
> So why is this telling me I am not passing enough settings?
>
> Thanks
> Dan
>
>
>
> _______________________________________________
> StarCluster mailing list
> StarCluster at mit.edu
> http://mailman.mit.edu/mailman/listinfo/starcluster
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mailman.mit.edu/pipermail/starcluster/attachments/20101031/9e2b24f9/attachment.htm