[miso-users] AttributeError: 'module' object has no attribute 'MISO_ALGO_CLASSES'

Matthew B. Johnson matthew.johnson at childrens.harvard.edu
Wed Jun 5 17:31:40 EDT 2013


Hi all -
I am not too familiar with python, and after installing miso ran the
test_miso.py script and got this error at the last step. I got the same
error running run_events_analysis.py on my own data. Any help would be
greatly appreciated!
Thanks,
Matt

Executing: python /home/mbj2/misopy-0.4.9/misopy/run_events_analysis.py
 --compute-genes-psi
/home/mbj2/misopy-0.4.9/misopy/gff-events/mm9/genes/Atp2b1/indexed
/home/mbj2/misopy-0.4.9/misopy/test-output/sam-output/c2c12.Atp2b1.sorted.bam
--output-dir /home/mbj2/misopy-0.4.9/misopy/test-output/gene-psi-output
--read-len 35
Traceback (most recent call last):
  File "/home/mbj2/misopy-0.4.9/misopy/run_events_analysis.py", line 16, in
<module>
    import misopy.run_miso as run_miso
  File "/home/mbj2/.local/lib/python2.6/site-packages/misopy/run_miso.py",
line 18, in <module>
    import misopy.miso_sampler as miso
  File
"/home/mbj2/.local/lib/python2.6/site-packages/misopy/miso_sampler.py",
line 169, in <module>
    class MISOSampler:
  File
"/home/mbj2/.local/lib/python2.6/site-packages/misopy/miso_sampler.py",
line 210, in MISOSampler
    algorithm=pysplicing.MISO_ALGO_CLASSES,
AttributeError: 'module' object has no attribute 'MISO_ALGO_CLASSES'
.
----------------------------------------------------------------------
Ran 3 tests in 2.133s

OK
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