[miso-users] apparent errors in misopy test_miso.py file locations

[Yarden Katz]

Hi David,

Thanks for this report -- it is fixed in the GitHub repository now, and will be incorporated into the next release.

Best, --Yarden

On Oct 8, 2012, at 6:32 PM, David Quigley wrote:

> Hi folks,
> 
> I just installed the latest misopy and found two errors in the test_miso script that are caused by file locations errors. Presumably the directory structure changed and the test script didn't follow along. I've corrected them below to point out the locations:
> 
>        self.test_sam_filename = os.path.join(self.tests_data_dir,
> #                                              "sam-data",
>                                              "c2c12.Atp2b1.sam")
> 
> # First index the GFF of interest
> #        gff_filename = os.path.join(self.gff_events_dir, "mm9", "genes", "Atp2b1.mm9.gff")
>        gff_filename = os.path.join(self.gff_events_dir, "Atp2b1.mm9.gff") 
> 
> Best regards,
> 
> David Quigley
> 
> 
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