[miso-users] [help]sashimi-plot IndexError: list index out of range?

[zhenghui01@gmail.com]

Hi Michael,
Thank you! I found out that I set only four colors but I have six bam
files. That fix solves the error.

Regards,
Jerry

On Mon, Apr 23, 2012 at 3:23 PM, Michael Lovci <michaeltlovci at gmail.com>wrote:

> add more colors to the list of colors in your sashimi_plot_settings.txt
> file
>
> On Mon, Apr 23, 2012 at 12:16 PM, <zhenghui01 at gmail.com> wrote:
>
>> Hi All,
>> I finished running miso and was trying to plot using sashimi-plot, but
>> got the following error:
>>
>> Traceback (most recent call last):
>>   File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 283, in
>> <module>
>>     main()
>>   File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 279, in
>> main
>>     plot_event(event_name, pickle_dir, settings_filename, output_dir)
>>   File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 133, in
>> plot_event
>>     output_dir)
>>   File
>> "/opt/python/2.7.2/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_gene.py",
>> line 654, in plot_density_from_file
>>     plot_density(sashimi_obj, pickle_filename, event)
>>   File
>> "/opt/python/2.7.2/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_gene.py",
>> line 199, in plot_density
>>     color = colors[i]
>> IndexError: list index out of range
>>
>>
>> It seemed my miso output files loaded successfully. What could be the
>> possible source of the error? How should I fix it? Thank you!
>>
>>
>> Regards,
>> Jerry
>>
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>> miso-users at mit.edu
>> http://mailman.mit.edu/mailman/listinfo/miso-users
>>
>>
>
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