[miso-users] [help]sashimi-plot IndexError: list index out of range?

zhenghui01@gmail.com zhenghui01 at gmail.com
Mon Apr 23 15:16:52 EDT 2012


Hi All,
I finished running miso and was trying to plot using sashimi-plot, but got
the following error:

Traceback (most recent call last):
  File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 283, in
<module>
    main()
  File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 279, in main
    plot_event(event_name, pickle_dir, settings_filename, output_dir)
  File "/ihome/zhenghui/miso/misopy/sashimi_plot/plot.py", line 133, in
plot_event
    output_dir)
  File
"/opt/python/2.7.2/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_gene.py",
line 654, in plot_density_from_file
    plot_density(sashimi_obj, pickle_filename, event)
  File
"/opt/python/2.7.2/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_gene.py",
line 199, in plot_density
    color = colors[i]
IndexError: list index out of range


It seemed my miso output files loaded successfully. What could be the
possible source of the error? How should I fix it? Thank you!


Regards,
Jerry
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mailman.mit.edu/mailman/private/miso-users/attachments/20120423/a6276a5d/attachment.htm


More information about the miso-users mailing list