[OWW-Discuss] Announcing PDBWiki

Thu Apr 10 17:50:10 EDT 2008

Folks,I think we all agree that OWW as an entity wants to sign the letter of
support. SC members: do I hear any dissenting votes? If not, I'll add OWW to
the list.

--Lorrie

On Thu, Apr 10, 2008 at 11:47 AM, John Cumbers <johncumbers at gmail.com>
wrote:

> sounds good to me,
> John
>
>
> On Wed, Apr 9, 2008 at 9:17 PM, Lorrie LeJeune <lorrielejeune at gmail.com>
> wrote:
>
> > I agree with Jason. It makes more sense to add the OWW SC to the
> > existing list of supporters on the letter than to draft a new one.
> > --Lorrie
> >
> >
> >
> > On Wed, Apr 9, 2008 at 9:10 PM, Jason Kelly <jasonk at mit.edu> wrote:
> >
> > > Noticed that they've already got a letter up here:
> > >
> > > http://ecoliwiki.net/colipedia/index.php/Draft_letter_to_Science_about_wikifying_genome_information
> > >
> > > Maybe we could bring it up at the SC meeting and if people are OK with
> > > it, the SC could sign off on the letter above (they are submitting it
> > > on friday).  I personally think that it has more weight if it's signed
> > > by a volunteer group of scientists that collaborate and share on a
> > > wiki, rather than from folks running a wiki ;)
> > >
> > > thanks,
> > > jason
> > >
> > > On Wed, Apr 9, 2008 at 8:46 PM, John Cumbers <johncumbers at gmail.com>
> > > wrote:
> > > > Hi Dan,
> > > >  This sounds like something we should be supporting, Lorrie, please
> > > could
> > > > you pen a letter of support?  this could either be from you as
> > > Managing
> > > > Director of OWW, or from the SC,
> > > > cheers,
> > > > John
> > > >
> > > >
> > > >
> > > >  On Wed, Apr 9, 2008 at 4:39 AM, Dan Bolser <dan.bolser at gmail.com>
> > > wrote:
> > > > >
> > > > > On 08/04/2008, Austin Che <austin at csail.mit.edu> wrote:
> > > > >  > "Dan Bolser" <dan.bolser at gmail.com> wrote:
> > > > >  >
> > > > >  >  > Dear OWW,
> > > > >  >  >
> > > > >  >  > Following the recent discussions about the proposal to
> > > 'wikify'
> > > > >  >  > GenBank, I would like to ask for feedback on our 'PDBWiki'
> > > project.
> > > > >  >  >
> > > > >  >  > PDBWiki is basically an open experiment towards a wiki-style
> > > system
> > > > >  >  > based on the Protein Data Bank (PDB). There is one page per
> > > PDB
> > > > entry
> > > > >  >  > where users can add annotations but editing the source data
> > > is
> > > > >  >  > currently not allowed.
> > > > >  >
> > > > >  >
> > > > >  >     pdbwiki sounds great!
> > > > >  >
> > > > >  >     I also just saw this:
> > > > >  >
> > > >
> > > http://ecoliwiki.net/colipedia/index.php/Draft_letter_to_Science_about_wikifying_genome_information
> > > > >  >     Should OWW/pdbwiki sign on to the letter?
> > > > >
> > > > >
> > > > > The letter is interesting, and makes some very good points. I
> > > think it
> > > > >  would be a shame for OWW not to get on board with this kind of
> > > > >  'awareness' exercise. Currently there are a lot of opinions,
> > > > >  expectations and prejudices surrounding the whole idea of
> > > 'community
> > > > >  annotation'. The more scientists who have hands on experience
> > > with
> > > > >  wiki (for example), the better we will be able to move towards
> > > > >  improved database systems in biology and bioinformatics.
> > > > >
> > > > >  For us the idea was to start small and to keep things practical.
> > > > >  PDBWiki simply provides a system whereby free-text community
> > > > >  annotation can be applied to each database entry. It will be
> > > > >  interesting to see how this approach pans out.
> > > > >
> > > > >
> > > > >  Dan.
> > > > >
> > > > >
> > > > >
> > > > >  --
> > > > >  BiO.CC
> > > > >
> > > > >
> > > > >
> > > > > _______________________________________________
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> > > > >
> > > >
> > > >
> > > >
> > > > --
> > > >
> > > > John Cumbers, Graduate Student
> > > > Molecular Biology, Cell Biology, and Biochemistry
> > > > Biology and Medicine, Brown University, Box G-W
> > > > Providence, Rhode Island, 02912, USA
> > > >  Tel USA: +1 401 523 8190, Fax: +1 401 863-2166, UK to USA: 0207 617
> > > 7824
> > > >
> > > > Delivery address: Brown University (EEB) Biomed Stock Room
> > > > 34 OLIVE ST, Providence, RI 02912
> > > >
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> > > >
> > > >
> > >
> >
> >
>
>
> --
> John Cumbers, Graduate Student
> Molecular Biology, Cell Biology, and Biochemistry
> Biology and Medicine, Brown University, Box G-W
> Providence, Rhode Island, 02912, USA
> Tel USA: +1 401 523 8190, Fax: +1 401 863-2166, UK to USA: 0207 617 7824
>
> Delivery address: Brown University (EEB) Biomed Stock Room
> 34 OLIVE ST, Providence, RI 02912
>
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