[miso-users] Error during summarize_miso

[Anil Kesarwani]

Dear MISO Developer,

I ran the three steps of MISO, but the error during third step. Could you
please take a look and resolve the issue. Your response is highly
appreciated.

STEP1
miso --run $SE $Control_1a --output-dir $outdir/$name/control --read-len
101 --paired-end 250 15 --settings-filename $setting_file
STEP2
miso_pack --pack $outdir/$name/control
STEP3
summarize_miso --summarize-samples $outdir/$name/srsf4 $outdir/$name/srsf4

Loading events from: /projects/kesara/SR/MISO/SE/srsf4
Writing summary to:
/projects/kesara/SR/MISO/SE/srsf4/summary/srsf4.miso_summary
Traceback (most recent call last):
  File "/opt/compsci/python/2.7.3/bin/summarize_miso", line 9, in <module>
    load_entry_point('misopy==0.5.3', 'console_scripts', 'summarize_miso')()
  File
"/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/summarize_miso.py",
line 93, in main
    use_compressed=use_compressed)
  File
"/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/samples_utils.py",
line 309, in summarize_sampler_results
    output_fields = format_credible_intervals(event_name, samples)
  File
"/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/credible_intervals.py",
line 22, in format_credible_intervals
    cred_interval = compute_credible_intervals(samples)
  File
"/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/credible_intervals.py",
line 54, in compute_credible_intervals
    cred_interval = [samples[lower_bound_indx], samples[upper_bound_indx]]
IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis
(`None`) and integer or boolean arrays are valid indices



*A​NIL KESARWANI, PhD*
Postdoctoral Associate
​ in Bioinformatics​

Yale Cancer Center
​, Section of Hema​tology

300 George Street
​,​
Suite 787, New Haven CT 06510 USA
Email:
kesarwani.anil at gmail.com <nil.kesarwani at yale.edu>  Office : +1 203 737
6990 Fax:
203 785 7232
LinkedIn​:
https://www.linkedin.com/in/anil-kesarwani-4081889​
<Kesarwani.anil at gmail.com>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mailman.mit.edu/pipermail/miso-users/attachments/20170325/b6baea90/attachment.html