<div dir="ltr"><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Dear MISO Developer,<br><br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">I ran the three steps of MISO, but the error during third step. Could you please take a look and resolve the issue. Your response is highly appreciated.<br><br>STEP1<br>miso --run $SE $Control_1a --output-dir $outdir/$name/control --read-len 101 --paired-end 250 15 --settings-filename $setting_file <br>STEP2<br>miso_pack --pack $outdir/$name/control <br>STEP3<br>summarize_miso --summarize-samples $outdir/$name/srsf4 $outdir/$name/srsf4 <br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif"><br>Loading events from: /projects/kesara/SR/MISO/SE/srsf4<br>Writing summary to: /projects/kesara/SR/MISO/SE/srsf4/summary/srsf4.miso_summary<br>Traceback (most recent call last):<br> File "/opt/compsci/python/2.7.3/bin/summarize_miso", line 9, in <module><br> load_entry_point('misopy==0.5.3', 'console_scripts', 'summarize_miso')()<br> File "/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/summarize_miso.py", line 93, in main<br> use_compressed=use_compressed)<br> File "/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/samples_utils.py", line 309, in summarize_sampler_results<br> output_fields = format_credible_intervals(event_name, samples)<br> File "/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/credible_intervals.py", line 22, in format_credible_intervals<br> cred_interval = compute_credible_intervals(samples)<br> File "/opt/compsci/python/2.7.3/lib/python2.7/site-packages/misopy/credible_intervals.py", line 54, in compute_credible_intervals<br> cred_interval = [samples[lower_bound_indx], samples[upper_bound_indx]]<br>IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices<br clear="all"></div><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><span style="color:rgb(0,0,0)"><span style="font-family:arial,helvetica,sans-serif"><b><br><br><br>A<div style="display:inline">NIL KESARWANI</div>, PhD</b><br></span></span></div><div><span style="color:rgb(0,0,0)"><span style="font-family:arial,helvetica,sans-serif">Postdoctoral Associate<div style="display:inline"> in Bioinformatics</div><br></span></span></div><div><span style="color:rgb(0,0,0)"><span style="font-family:arial,helvetica,sans-serif"><font size="2">Yale Cancer Center<div style="display:inline">, Section of Hematology</div><br></font></span></span></div><div><span style="color:rgb(0,0,0)"><span style="font-family:arial,helvetica,sans-serif">300 George Street<div style="display:inline">,</div> Suite 787, New Haven CT 06510 USA</span></span></div><div><span style="color:rgb(0,0,0)"><span style="font-family:arial,helvetica,sans-serif"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice">Email: </span></span></span></span></span></span></span><span style="font-family:arial,helvetica,sans-serif"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><div style="display:inline"><a href="mailto:nil.kesarwani@yale.edu" target="_blank">kesarwani.anil@gmail.com</a> <span><span style="font-family:arial,helvetica,sans-serif"><font size="2">Office : <span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><a href="tel:%2B1%20203%20737%206990" value="+12037376990" target="_blank">+1 203 737 6990</a> Fax: 203 785 7232</span></span></span></span></span></font></span></span></div></span></span></span></span></span></span></span></span></div><div><span style="font-family:arial,helvetica,sans-serif"><font size="2"><span style="color:rgb(0,0,0)"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><span title="Call with Google Voice"><div style="display:inline">LinkedIn: </div></span></span></span></span></span></span></span><span style="color:rgb(0,0,0)"><a href="https://www.linkedin.com/in/anil-kesarwani-4081889" target="_blank">https://www.linkedin.com/in/anil-kesarwani-4081889</a></span><a href="mailto:Kesarwani.anil@gmail.com" target="_blank"></a></font></span></div></div></div></div></div></div></div></div></div></div>
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