[miso-users] (no subject)

[John Tobias]

I’m seeing the same error as below. It’s only happening, though, on 1 of 8 comparisons I’m doing.

compare_miso --compare-samples ~/ck/misoEvents/ALEfilt_N/ ~/ck/misoEvents/ALEfilt_H/ ~/ck/misoComps/
.
.
.

Traceback (most recent call last):
  File "/home/jtobias/.local/bin/compare_miso", line 9, in <module>
    load_entry_point('misopy==0.5.1', 'console_scripts', 'compare_miso')()
  File "/home/jtobias/.local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/compare_miso.py", line 94, in main
    use_compressed=use_compressed)
  File "/home/jtobias/.local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/hypothesis_test.py", line 266, in output_samples_comparison
    diff_range)
  File "/home/jtobias/.local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/hypothesis_test.py", line 156, in compute_delta_densities
    %(samples1_filename, samples2_filename)
NameError: global name 'samples1_filename' is not defined



On Mar 7, 2014, at 3:19 AM, Sabine Dietmann <sabine.dietmann at gmail.com> wrote:

> If trying to use the latest MISO version and
> "compare_miso --compare-samples WT  KO comparison"
> 
> I would get an error that sample names are not found:
> 
>   File "/arch/Linux-x86_64/bin/compare_miso", line 9, in <module>
>     load_entry_point('misopy==0.5.1', 'console_scripts', 'compare_miso')()
>   File ".local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/compare_miso.py", line 94, in main
>     use_compressed=use_compressed)
>   File "local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/hypothesis_test.py", line 266, in output_samples_comparison
>     diff_range)
>   File ".local/lib/python2.7/site-packages/misopy-0.5.1-py2.7-linux-x86_64.egg/misopy/hypothesis_test.py", line 156, in compute_delta_densities
>     %(samples1_filename, samples2_filename)
> 
> it does not help to specify the comparison-labels, I have tried that too.
> 
> 
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