[miso-users] Running MISO on replicates

[Manjusha Pande]

Hi Yarden,

I am running MISO on two groups of 3 samples each ((WT1, WT2, WT3, Mutant1,
Mutant2 and Mutant3). I ran the steps up to summarize-samples on the
individual samples. I want to run the differential expression step on the
two groups.

Under FAQ, I see a description on how to run MISO on replicates. I was
wondering if you could elaborate on how to pool samples within a group for
downstream analysis. An example of run_miso.py command would be very
helpful.

Thank you.

MP
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