[miso-users] Ignoring multireads while making sashimi plot

[Yarden Katz]

Hi Marcel,

This is terrific, thank you -- I will add it to the repository and it will be included in the next version.  I'm having a hectic week but if you don't see it added within a week please ping me again.

Thanks. Best, --Yarden




On Oct 23, 2012, at 8:46 AM, M.C.vanVerk wrote:

> Hi Yarden,
>  
> Multireads are in general a big problem for RNA-Seq analysis. I assumed it would be very handy if you exclude the muti-reads while making the plot with sashimi via de sashimi_plot_settings file. I already incorporated it in the plot_gene.py script and the three required changes are preceded by “# new lines Marcel”, so if you like it you can easily add it to the script.
>  
> Addition to the sashimi_plot_settings file:
>  
> # Skip multireads while plotting
> skip_multi_reads = False
>  
> Best,
> Marcel
>  
> | Dr. Marcel van Verk | Bioinformatician / Systems biologist | Plant-Microbe Interactions | Department of Biology | Faculty of Science | Utrecht University | Kruyt-building |Room W308 | Padualaan 8 | 3584 CH Utrecht | The Netherlands | T +31 30 253 6857 | F +31 30 253 2837 | M.C.vanVerk at uu.nl | website www.uu.nl/science/pmi |
>  
>  
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