[galib] Compilation trouble

[Mark Hodgson]

Hi all,

I have been using GALib 2.4.5 on Fedora Linux Core 2 for some time now. 
However, i recently performed a fresh install of Fedora Core 3 and am 
now unable to make GAlib.

Here is the make output that i am recieving:

[root at localhost galib245]# make
cd ga; make
make[1]: Entering directory `/home/mark/.Trash/galib245/ga'
make[1]: `libga.a' is up to date.
make[1]: Leaving directory `/home/mark/.Trash/galib245/ga'
cd examples; make
make[1]: Entering directory `/home/mark/.Trash/galib245/examples'
g++ -g -Wall -O -fexceptions -O0 -I.. -c ex21.C
In file included from 
/usr/lib/gcc/i386-redhat-linux/3.4.2/../../../../include/c++/3.4.2/backward/iostream.h:31,
                 from ex21.C:15:
/usr/lib/gcc/i386-redhat-linux/3.4.2/../../../../include/c++/3.4.2/backward/backward_warning.h:32:2: 
warning: #warning This file includes at least one deprecated or 
antiquated header. Please consider using one of the 32 headers found in 
section 17.4.1.2 of the C++ standard. Examples include substituting the 
<X> header for the <X.h> header for C++ includes, or <iostream> instead 
of the deprecated header <iostream.h>. To disable this warning use 
-Wno-deprecated.
In file included from ../ga/ga.h:171,
                 from ex21.C:16:
../ga/GA1DArrayGenome.h: In member function `GA1DArrayGenome<T>& 
GA1DArrayGenome<T>::operator=(const T*)':
../ga/GA1DArrayGenome.h:66: error: `sz' undeclared (first use this function)
../ga/GA1DArrayGenome.h:66: error: (Each undeclared identifier is 
reported only once for each function it appears in.)
../ga/GA1DArrayGenome.h: In member function `const T& 
GA1DArrayGenome<T>::gene(unsigned int) const':
../ga/GA1DArrayGenome.h:78: error: `a' undeclared (first use this function)
../ga/GA1DArrayGenome.h: In member function `T& 
GA1DArrayGenome<T>::gene(unsigned int, const T&)':
../ga/GA1DArrayGenome.h:80: error: `a' undeclared (first use this function)
../ga/GA1DArrayGenome.h: At global scope:
../ga/GA1DArrayGenome.h:155: error: `CONTENTS' was not declared in this 
scope
In file included from ../ga/GA1DArrayGenome.h:178,
                 from ../ga/ga.h:171,
                 from ex21.C:16:
../ga/GA1DArrayGenome.C: In member function `virtual int 
GA1DArrayGenome<T>::resize(int)':
../ga/GA1DArrayGenome.C:136: error: `sz' undeclared (first use this 
function)
../ga/GA1DArrayGenome.C: In constructor 
`GA1DArrayAlleleGenome<T>::GA1DArrayAlleleGenome(unsigned int, const 
GAAlleleSet<T>&, float (*)(GAGenome&), void*)':
../ga/GA1DArrayGenome.C:227: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA1DArrayGenome.C:227: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA1DArrayGenome.C:227: error: (if you use `-fpermissive', G++ will 
accept your code, but allowing the use of an undeclared name is deprecated)
../ga/GA1DArrayGenome.C:228: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA1DArrayGenome.C:228: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA1DArrayGenome.C: In constructor 
`GA1DArrayAlleleGenome<T>::GA1DArrayAlleleGenome(const 
GAAlleleSetArray<T>&, float (*)(GAGenome&), void*)':
../ga/GA1DArrayGenome.C:243: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA1DArrayGenome.C:243: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA1DArrayGenome.C:244: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA1DArrayGenome.C:244: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA1DArrayGenome.C: In member function 
`virtual int GA1DArrayAlleleGenome<T>::resize(int)':
../ga/GA1DArrayGenome.C:298: error: `nx' undeclared (first use this 
function)
../ga/GA1DArrayGenome.C:302: error: `a' undeclared (first use this function)
In file included from ../ga/ga.h:172,
                 from ex21.C:16:
../ga/GA2DArrayGenome.h: In member function `const T& 
GA2DArrayGenome<T>::gene(unsigned int, unsigned int) const':
../ga/GA2DArrayGenome.h:60: error: `a' undeclared (first use this function)
../ga/GA2DArrayGenome.h: In member function `T& 
GA2DArrayGenome<T>::gene(unsigned int, unsigned int, const T&)':
../ga/GA2DArrayGenome.h:62: error: `a' undeclared (first use this function)
../ga/GA2DArrayGenome.h: At global scope:
../ga/GA2DArrayGenome.h:124: error: `CONTENTS' was not declared in this 
scope
In file included from ../ga/GA2DArrayGenome.h:145,
                 from ../ga/ga.h:172,
                 from ex21.C:16:
../ga/GA2DArrayGenome.C: In member function `virtual int 
GA2DArrayGenome<T>::resize(int, int)':
../ga/GA2DArrayGenome.C:89: error: `sz' undeclared (first use this function)
../ga/GA2DArrayGenome.C:116: error: there are no arguments to `move' 
that depend on a template parameter, so a declaration of `move' must be 
available
../ga/GA2DArrayGenome.C: In constructor 
`GA2DArrayAlleleGenome<T>::GA2DArrayAlleleGenome(unsigned int, unsigned 
int, const GAAlleleSet<T>&, float (*)(GAGenome&), void*)':
../ga/GA2DArrayGenome.C:274: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA2DArrayGenome.C:274: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA2DArrayGenome.C:275: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA2DArrayGenome.C:275: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA2DArrayGenome.C: In constructor 
`GA2DArrayAlleleGenome<T>::GA2DArrayAlleleGenome(unsigned int, unsigned 
int, const GAAlleleSetArray<T>&, float (*)(GAGenome&), void*)':
../ga/GA2DArrayGenome.C:291: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA2DArrayGenome.C:291: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA2DArrayGenome.C:292: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA2DArrayGenome.C:292: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA2DArrayGenome.C: In member function 
`virtual int GA2DArrayAlleleGenome<T>::resize(int, int)':
../ga/GA2DArrayGenome.C:338: error: `nx' undeclared (first use this 
function)
../ga/GA2DArrayGenome.C:339: error: `ny' undeclared (first use this 
function)
../ga/GA2DArrayGenome.C:346: error: `a' undeclared (first use this function)
../ga/GA2DArrayGenome.C:354: error: `sz' undeclared (first use this 
function)
In file included from ../ga/ga.h:173,
                 from ex21.C:16:
../ga/GA3DArrayGenome.h: In member function `const T& 
GA3DArrayGenome<T>::gene(unsigned int, unsigned int, unsigned int) const':
../ga/GA3DArrayGenome.h:63: error: `a' undeclared (first use this function)
../ga/GA3DArrayGenome.h: In member function `T& 
GA3DArrayGenome<T>::gene(unsigned int, unsigned int, unsigned int, const 
T&)':
../ga/GA3DArrayGenome.h:66: error: `a' undeclared (first use this function)
../ga/GA3DArrayGenome.h: At global scope:
../ga/GA3DArrayGenome.h:139: error: `CONTENTS' was not declared in this 
scope
In file included from ../ga/GA3DArrayGenome.h:160,
                 from ../ga/ga.h:173,
                 from ex21.C:16:
../ga/GA3DArrayGenome.C: In member function `virtual int 
GA3DArrayGenome<T>::resize(int, int, int)':
../ga/GA3DArrayGenome.C:92: error: `sz' undeclared (first use this function)
../ga/GA3DArrayGenome.C: In constructor 
`GA3DArrayAlleleGenome<T>::GA3DArrayAlleleGenome(unsigned int, unsigned 
int, unsigned int, const GAAlleleSet<T>&, float (*)(GAGenome&), void*)':
../ga/GA3DArrayGenome.C:327: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA3DArrayGenome.C:327: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA3DArrayGenome.C:328: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA3DArrayGenome.C:328: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA3DArrayGenome.C: In constructor 
`GA3DArrayAlleleGenome<T>::GA3DArrayAlleleGenome(unsigned int, unsigned 
int, unsigned int, const GAAlleleSetArray<T>&, float (*)(GAGenome&), 
void*)':
../ga/GA3DArrayGenome.C:344: error: `ElementComparator' undeclared 
(first use this function)
../ga/GA3DArrayGenome.C:344: error: there are no arguments to 
`comparator' that depend on a template parameter, so a declaration of 
`comparator' must be available
../ga/GA3DArrayGenome.C:345: error: `OnePointCrossover' undeclared 
(first use this function)
../ga/GA3DArrayGenome.C:345: error: there are no arguments to 
`crossover' that depend on a template parameter, so a declaration of 
`crossover' must be available../ga/GA3DArrayGenome.C: In member function 
`virtual int GA3DArrayAlleleGenome<T>::resize(int, int, int)':
../ga/GA3DArrayGenome.C:391: error: `nx' undeclared (first use this 
function)
../ga/GA3DArrayGenome.C:392: error: `ny' undeclared (first use this 
function)
../ga/GA3DArrayGenome.C:393: error: `nz' undeclared (first use this 
function)
../ga/GA3DArrayGenome.C:404: error: `a' undeclared (first use this function)
../ga/GA3DArrayGenome.C:429: error: `sz' undeclared (first use this 
function)
In file included from ../ga/GAListGenome.h:68,
                 from ../ga/ga.h:174,
                 from ex21.C:16:
../ga/GAListGenome.C: In member function `virtual int 
GAListGenome<T>::write(std::ostream&) const':
../ga/GAListGenome.C:84: error: `hd' undeclared (first use this function)
../ga/GAListGenome.C: In member function `virtual int 
GAListGenome<T>::equal(const GAGenome&) const':
../ga/GAListGenome.C:112: error: there are no arguments to `size' that 
depend on a template parameter, so a declaration of `size' must be available
In file included from ../ga/GATreeGenome.h:71,
                 from ../ga/ga.h:175,
                 from ex21.C:16:
../ga/GATreeGenome.C: In member function `virtual int 
GATreeGenome<T>::write(std::ostream&) const':
../ga/GATreeGenome.C:107: error: `rt' undeclared (first use this function)
../ga/GATreeGenome.C:107: error: no matching function for call to 
`_tt(std::ostream&, <type error>)'
../ga/GATreeGenome.C: In member function `virtual int 
GATreeGenome<T>::equal(const GAGenome&) const':
../ga/GATreeGenome.C:118: error: `rt' undeclared (first use this function)
In file included from ex21.C:18:
../ga/GAAllele.h: At global scope:
../ga/GAAllele.h: In instantiation of `GAAlleleSet<float>':
../ga/GARealGenome.C:22:   instantiated from here
../ga/GAAllele.h:147: error: template-id `operator==<float>' for `int 
operator==(const GAAlleleSet<float>&, const GAAlleleSet<float>&)' does 
not match any template declaration
../ga/GAAllele.h:148: error: template-id `operator!=<float>' for `int 
operator!=(const GAAlleleSet<float>&, const GAAlleleSet<float>&)' does 
not match any template declaration
ex21.C: In function `int main(int, char**)':
ex21.C:72: warning: comparison between signed and unsigned integer 
expressions
make[1]: *** [ex21.o] Error 1
make[1]: Leaving directory `/home/mark/.Trash/galib245/examples'
make: *** [all] Error 2



Any input would be greatly appriciated.
Many thanks,

Mark Hodgson