[miso-users] run-events-analysis stuck at "Waiting on 8 threads..."

[Maayan Kreitzman]

Hi Yarden and all,
I've previously run MISO successfully, (and it was really fast) but some 
things seem to have changed with the multithreading and cluster submission.

For running on a single host, it gets stuck at the "Waiting on 8 
threads..." step, and it's been there for about a week.

run_events_analysis.py --compute-genes-psi /testing/MISO/ENS_new/ accepted_hits.bam --output-dir $outdir --read-len 42 –prefilter -p 8


For running on a cluster, are you supposed to run the same command 
(without the -p 8 and with the --use-cluster) on the head-node? 
Previously I just submitted the job to the cluster myself, but the docs 
imply that miso will do the submitting.

thanks,
maayan

-- 
Maayan Kreitzman
Computional Biologist
Michael Smith Genome Sciences Centre
BC Cancer Agency
Vancouver, BC V5Z 4S6