[miso-users] Installation problem

[Yarden Katz]

Thanks Gabor.  If you want to build both by just typing "make", I do believe the error will go away if you upgrade your version of the make program/autotools...
  
  --Yarden






On Dec 14, 2011, at 1:44 PM, Gábor Csárdi wrote:

> Julien,
> 
> if you only need the Python version and not the R, then instead of
> 'make' you can run 'make Pythonpackage' and this should solve your
> error. (Which seems to come from some autotools version mismatch.)
> 
> Best,
> Gabor
> 
> On Wed, Dec 14, 2011 at 12:49 PM, Julien Roux <jroux at uchicago.edu> wrote:
>> Dear MISO developers,
>> 
>> I am trying to install fastMISO but I encountered some errors when
>> running the "make" command (see below)
>> Any idea how to fix this?
>> Thanks a lot
>> Julien
>> 
>> --------------------------------
>> [jroux at bigmem01 MISO]$ make
>> cp src/assignment.c splicing/src/assignment.c
>> cp src/complexity.c splicing/src/complexity.c
>> cp src/convert.c splicing/src/convert.c
>> cp src/error.c splicing/src/error.c
>> cp src/fortran_stuff.c splicing/src/fortran_stuff.c
>> cp src/gff.c splicing/src/gff.c
>> cp src/ident.c splicing/src/ident.c
>> cp src/lapack.c splicing/src/lapack.c
>> cp src/lawson_hanson_nnls.c splicing/src/lawson_hanson_nnls.c
>> cp src/matrix.c splicing/src/matrix.c
>> cp src/memory.c splicing/src/memory.c
>> cp src/miso.c splicing/src/miso.c
>> cp src/miso_paired.c splicing/src/miso_paired.c
>> cp src/nnls.c splicing/src/nnls.c
>> cp src/qsort.c splicing/src/qsort.c
>> cp src/qsort_r.c splicing/src/qsort_r.c
>> cp src/random.c splicing/src/random.c
>> cp src/simulator.c splicing/src/simulator.c
>> cp src/solve.c splicing/src/solve.c
>> cp src/strvector.c splicing/src/strvector.c
>> cp src/util.c splicing/src/util.c
>> cp src/vector.c splicing/src/vector.c
>> cp src/f2c.h splicing/src/f2c.h
>> cp src/splicing_error.h splicing/src/splicing_error.h
>> cp src/splicing.h splicing/src/splicing.h
>> cp src/splicing_lapack.h splicing/src/splicing_lapack.h
>> cp src/splicing_matrix.h splicing/src/splicing_matrix.h
>> cp src/splicing_matrix_pmt.h splicing/src/splicing_matrix_pmt.h
>> cp src/splicing_memory.h splicing/src/splicing_memory.h
>> cp src/splicing_pmt.h splicing/src/splicing_pmt.h
>> cp src/splicing_pmt_off.h splicing/src/splicing_pmt_off.h
>> cp src/splicing_random.h splicing/src/splicing_random.h
>> cp src/splicing_vector.h splicing/src/splicing_vector.h
>> cp src/splicing_vector_pmt.h splicing/src/splicing_vector_pmt.h
>> cp src/matrix.pmt splicing/src/matrix.pmt
>> cp src/vector.pmt splicing/src/vector.pmt
>> cd splicing && autoconf && autoheader
>> Use of inherited AUTOLOAD for non-method Autom4te::XFile::msg() is
>> deprecated at /usr/share/autoconf/Autom4te/XFile.pm line 238.
>> Can't locate auto/Autom4te/XFile/msg.al in @INC (@INC contains:
>> /usr/share/autoconf
>> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
>> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl
>> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
>> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl
>> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .)
>> at /usr/share/autoconf/Autom4te/XFile.pm line 238
>> make: *** [splicing_0.1.tar.gz] Error 1
>> 
>> --
>> Julien Roux, PhD
>> Gilad lab, Department of Human Genetics, University of Chicago
>> http://giladlab.uchicago.edu/
>> 920 East 58th Street, CLSC 317, Chicago, IL 60637, USA
>> tel: +1-773-834-1984   fax: +1-773-834-8470
>> 
>> _______________________________________________
>> miso-users mailing list
>> miso-users at mit.edu
>> http://mailman.mit.edu/mailman/listinfo/miso-users
> 
> 
> 
> -- 
> Gabor Csardi <gcsardi at stat.harvard.edu>  Dpt of Statistics, Harvard University
> 
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