[miso-users] Installation problem

[Gábor Csárdi]

Julien,

if you only need the Python version and not the R, then instead of
'make' you can run 'make Pythonpackage' and this should solve your
error. (Which seems to come from some autotools version mismatch.)

Best,
Gabor

On Wed, Dec 14, 2011 at 12:49 PM, Julien Roux <jroux at uchicago.edu> wrote:
> Dear MISO developers,
>
> I am trying to install fastMISO but I encountered some errors when
> running the "make" command (see below)
> Any idea how to fix this?
> Thanks a lot
> Julien
>
> --------------------------------
> [jroux at bigmem01 MISO]$ make
> cp src/assignment.c splicing/src/assignment.c
> cp src/complexity.c splicing/src/complexity.c
> cp src/convert.c splicing/src/convert.c
> cp src/error.c splicing/src/error.c
> cp src/fortran_stuff.c splicing/src/fortran_stuff.c
> cp src/gff.c splicing/src/gff.c
> cp src/ident.c splicing/src/ident.c
> cp src/lapack.c splicing/src/lapack.c
> cp src/lawson_hanson_nnls.c splicing/src/lawson_hanson_nnls.c
> cp src/matrix.c splicing/src/matrix.c
> cp src/memory.c splicing/src/memory.c
> cp src/miso.c splicing/src/miso.c
> cp src/miso_paired.c splicing/src/miso_paired.c
> cp src/nnls.c splicing/src/nnls.c
> cp src/qsort.c splicing/src/qsort.c
> cp src/qsort_r.c splicing/src/qsort_r.c
> cp src/random.c splicing/src/random.c
> cp src/simulator.c splicing/src/simulator.c
> cp src/solve.c splicing/src/solve.c
> cp src/strvector.c splicing/src/strvector.c
> cp src/util.c splicing/src/util.c
> cp src/vector.c splicing/src/vector.c
> cp src/f2c.h splicing/src/f2c.h
> cp src/splicing_error.h splicing/src/splicing_error.h
> cp src/splicing.h splicing/src/splicing.h
> cp src/splicing_lapack.h splicing/src/splicing_lapack.h
> cp src/splicing_matrix.h splicing/src/splicing_matrix.h
> cp src/splicing_matrix_pmt.h splicing/src/splicing_matrix_pmt.h
> cp src/splicing_memory.h splicing/src/splicing_memory.h
> cp src/splicing_pmt.h splicing/src/splicing_pmt.h
> cp src/splicing_pmt_off.h splicing/src/splicing_pmt_off.h
> cp src/splicing_random.h splicing/src/splicing_random.h
> cp src/splicing_vector.h splicing/src/splicing_vector.h
> cp src/splicing_vector_pmt.h splicing/src/splicing_vector_pmt.h
> cp src/matrix.pmt splicing/src/matrix.pmt
> cp src/vector.pmt splicing/src/vector.pmt
> cd splicing && autoconf && autoheader
> Use of inherited AUTOLOAD for non-method Autom4te::XFile::msg() is
> deprecated at /usr/share/autoconf/Autom4te/XFile.pm line 238.
> Can't locate auto/Autom4te/XFile/msg.al in @INC (@INC contains:
> /usr/share/autoconf
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl
> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .)
> at /usr/share/autoconf/Autom4te/XFile.pm line 238
> make: *** [splicing_0.1.tar.gz] Error 1
>
> --
> Julien Roux, PhD
> Gilad lab, Department of Human Genetics, University of Chicago
> http://giladlab.uchicago.edu/
> 920 East 58th Street, CLSC 317, Chicago, IL 60637, USA
> tel: +1-773-834-1984   fax: +1-773-834-8470
>
> _______________________________________________
> miso-users mailing list
> miso-users at mit.edu
> http://mailman.mit.edu/mailman/listinfo/miso-users



-- 
Gabor Csardi <gcsardi at stat.harvard.edu>  Dpt of Statistics, Harvard University