[StarCluster] SGE Execution errors - Ubuntu 12.04 Official

[Stephen Smith]

Hello,

I'm getting the following errors when submitting a job to SGE via qsub. 
I'm running the 12.04 Ubuntu starcluster AMI, modified only with the 
installation of the software I would like to run.  I received these same 
errors with a CentOS7 AMI I built from scratch as well - I'm not sure what 
I'm missing.  Any thoughts as to the cause?

/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 11: 
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/starenv: No 
such file or directory
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 24: 
reset_env: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 28: 
init_timers: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 29: 
start_finetimer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 33: 
stop_timer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39: 
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 81: 
start_timer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93: 
substitute_spaceescape: command not found


Thanks in advance,
Stephen

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