[StarCluster] starcluster sge plugin error

[Wei Tao]

I figured it out. Turns out I didn't set "DISABLE_QUEUE=True" when I set
"PLUGINS = sge". When I have both properly set in the config file, it
worked fine.

Thanks!

-Wei

On Wed, May 30, 2012 at 10:08 AM, Wei Tao <wei.tao at tsibiocomputing.com>wrote:

> Hi,
>
> I tried to use sge plugin for my cluster to disable master as an execution
> host. I edited my starcluster config file according to the online manual.
> When I start the cluster, I got the following error during the start up
> process. Any suggestions how to resolve this? Thanks!
>
>
> >>> Setting up NFS took 0.075 mins
> >>> Configuring passwordless ssh for root
> >>> Configuring passwordless ssh for sgeadmin
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Configuring SGE...
> >>> Configuring NFS exports path(s):
> /opt/sge6
> >>> Mounting all NFS export path(s) on 6 worker node(s)
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Setting up NFS took 0.018 mins
> >>> Removing previous SGE installation...
> >>> Installing Sun Grid Engine...
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Creating SGE parallel environment 'orte'
> 7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Adding parallel environment 'orte' to queue 'all.q'
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Running plugin sge
> >>> Configuring SGE...
> >>> Configuring NFS exports path(s):
> /opt/sge6
> >>> Mounting all NFS export path(s) on 6 worker node(s)
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Setting up NFS took 0.018 mins
> >>> Removing previous SGE installation...
> >>> Installing Sun Grid Engine...
> !!! ERROR - command 'cd /opt/sge6 && TERM=rxvt ./inst_sge -m -noremote
> -auto ./ec2_sge.conf' failed with status 1
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Updating SGE parallel environment 'orte'
> 7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Adding parallel environment 'orte' to queue 'all.q'
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Configuring cluster took 6.185 mins
>
>
> --
> Wei Tao, Ph.D.
> TSI Biocomputing LLC
> 617-564-0934
>
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>


-- 
Wei Tao, Ph.D.
TSI Biocomputing LLC
617-564-0934

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