[Starcluster] failed installing Sun Grid Engine...

[chuan gao]

Hi Justin and Dan,

Sorry for the late reply cuz I was tied up on a few things.

To Justin: I tried it without mount EBS and I still have that problem. I
believe it's related to this though cuz it happened at the last step of
configuring the cluster(all machines have been started by that time).

To Dan: I did tried reinstall paramiko (not in debug mode though since I
didn't find out how to do so,) and the system said installed sucessfully. I
also tried starting the cluster outside the directory without success.

I also tried the same thing on another machine which has ubuntu on it and I
got the same error. I am not the administrator to that machine but I guess
it should be ubuntu 9.04.

any ideas?  thank you guys very much for handling this.

Chuan


On Tue, Mar 16, 2010 at 7:13 PM, Justin Riley <jtriley at mit.edu> wrote:

> Hi Chuan,
>
> Sorry to hear you're having issues with StarCluster. I just got back in
> town,
> sorry for the delayed response.
>
> Dan, as always, thanks for responding :D
>
> Could you try launching a cluster without using the EBS volume and let me
> know
> if it succeeds? Nicolas Pinto had a similar issue with StarCluster and I
> believe it only happened for him when using EBS.
>
> Thanks,
>
> ~Justin
>
> On Tuesday 16 March 2010 2:15:12 pm chuan gao wrote:
> > I am using the standard AMI
> > the OS is  ubuntu 9.10
> > yes. I can ssh into AMI with no problem. actually, the error occured at
> the
> > last step when it is configuring NFS. I checked the AMI on amazon and
> they
> > have been started. and my permanent volume has been mounted.
> > concerning the error,
> > build/bdist.linux-i686/egg/paramiko/sftp_client.py
> > I looked into directory StarCluster-0.90.1/build/bdist.linux-i686 and
> > nothing is there. should there be egg/paramiko/sftp_client.py ?
> > Thanks
> >
> > On Tue, Mar 16, 2010 at 1:46 PM, Dan Yamins <dyamins at gmail.com> wrote:
> > > Justin is on this list, so I'm sure he'll respond soon.
> > >
> > > Are you using the standard AMI, or one you built yourself?
> > >
> > > Also, what is your operating system and version?
> > >
> > > Also, can you ssh into instances of the AMI, independently of
> > > starcluster?
> > >
> > > On Tue, Mar 16, 2010 at 1:17 PM, chuan gao <aggie.gao at gmail.com>
> wrote:
> > >> Thanks Dan, I am pretty sure that I got paramiko installed correctly.
> > >> I'll work on it a bit more.
> > >> will Justin have a chance to look at this email list and try to point
> > >> out what could be the problem?
> > >>
> > >> On Tue, Mar 16, 2010 at 11:21 AM, Dan Yamins <dyamins at gmail.com>
> wrote:
> > >>> Hm.  I'm not sure what the problem is (your version is fine).
> > >>> Something is clearly wrong with either your paramiko installation or
> > >>> the way that starcluster is using it.
> > >>>
> > >>> Have you tried testing paramiko outside the context of starcluster?
> > >>> Try testing it for normal ssh usage.  If that fails, then you'll
> > >>> probably have identified the problem.   (I don't know if you just
> > >>> installed it, perhaps reinstallation would then help.)
> > >>>
> > >>> If paramiko works normally, then perhaps there's an argument that is
> > >>> being passed on line 109 of starcluster/ssh.py that is supposed to
> > >>> represent an existing file object, that somehow isn't being properly
> > >>> created (probably earlier in the ssh cycle).  In this case, Justin
> (the
> > >>> creator of starcluster) should probably be the one to address your
> > >>> problem.
> > >>>
> > >>> Dan
> > >>>
> > >>> On Tue, Mar 16, 2010 at 10:57 AM, chuan gao <aggie.gao at gmail.com>
> wrote:
> > >>>> paramiko-1.7.6-py2.6.egg
> > >>>> Thanks for replying.
> > >>>>
> > >>>> On Tue, Mar 16, 2010 at 9:02 AM, Dan Yamins <dyamins at gmail.com>
> wrote:
> > >>>>> On Tue, Mar 16, 2010 at 1:05 AM, chuan gao <aggie.gao at gmail.com
> >wrote:
> > >>>>>> Here is the error message:
> > >>>>>> >>> Installing Sun Grid Engine...
> > >>>>>>
> > >>>>>> [SNIP]
> > >>>>>>
> > >>>>>>
> > >>>>>>   File "build/bdist.linux-i686/egg/paramiko/sftp_client.py", line
> > >>>>>> 675, in _read_response
> > >>>>>>   File "build/bdist.linux-i686/egg/paramiko/sftp_client.py", line
> > >>>>>> 701, in _convert_status
> > >>>>>> IOError: [Errno 2] No such file
> > >>>>>
> > >>>>> What version of paramiko do you have installed?
> > >>>>>
> > >>>>>
> > >>>>> _______________________________________________
> > >>>>> Starcluster mailing list
> > >>>>> Starcluster at mit.edu
> > >>>>> http://mailman.mit.edu/mailman/listinfo/starcluster
> >
>
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