Old version becomes active after retransport

[Michael Pokraka]

Good morning all,
 
I've encountered bit of versioning hell: 

A WF was transported and all was more or less well, it happily activated and
ran a new version 0004. The transport was repeated a few days later and the WF
activated version 0000. 

Has anyone encountered this and/or have any clue why it would do that?
Transport logs are all fine, and no other transports relating to this WF were
transported in between. 

Happy Friday, 
Mike