[miso-users] Human-mouse exon orthologues

[James Thomas]

Hello,

I'm trying to identify orthologous skipped exons between a human (hg19;
~600 events of interest total) dataset and a mouse (mm10) dataset. Has
anyone had luck with "lifting over" the MISO coordinates for these events.
I've tried the following:

1) Searching through Biomart to find exon orthologue table (can't seem to
find one)
2) Using blat to match the human sequence of skipped exons to a database of
sequences built from the mm10 dataset

I'll keep working on this and will post if I find a solution, but wanted to
see if anyone has had any luck with this! Thanks so much!

James
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