[miso-users] Help regarding MISO

[Swetha Chenna]

Hi there,

When I run miso on my BAM file, it finds "Thread batch-# might have
failed..." as follows.

05/13/2016 03:09:28 PM - miso_main - WARNING - Thread batch-0 might have
failed...
05/13/2016 03:09:28 PM - miso_main - WARNING - Thread batch-1 might have
failed...
05/13/2016 03:09:28 PM - miso_main - WARNING - Thread batch-2 might have
failed...
05/13/2016 03:09:28 PM - miso_main - WARNING - Thread batch-3 might have
failed...

Then I tried "module_availability", it finds all the dependent modules.
But when I run "unittest discover misopy", it says "FAIL:
test_a_sam_to_bam (misopy.test_miso.TestMISO)". I don't understand where
the problem is? Can you please help me out. Thanks in advance.

Regards,
Swetha.