[miso-users] Miso error

[Ankit Arora]

Am 30.03.2015 um 15:55 schrieb Ankit Arora:
> Dear Yarden,
>
>  Thanks a lot for replying. Yes I removed older version of miso and 
> installed 0.5.3 but still old error persists :
>
>   - GFF index: /home/aarora1/hg19/indexed
>   - BAM: /projects/aarora1/Result/C/accepted_hits_sorted.bam
>   - Read length: 60
>   - Output directory: /projects/aarora1/Miso
> Checking your GFF annotation and BAM for mismatches...
> Checking if BAM has mixed read lengths...
> Found reads of length 60 in BAM.
> Traceback (most recent call last):
>   File "./miso", line 9, in <module>
>     load_entry_point('misopy==0.5.3', 'console_scripts', 'miso')()
>   File 
> "/home/aarora1/Tool/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/miso.py", 
> line 591, in main
>     wait_on_jobs=wait_on_jobs)
>   File 
> "/home/aarora1/Tool/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/miso.py", 
> line 372, in compute_all_genes_psi
>     given_read_len=read_len)
>   File 
> "/home/aarora1/Tool/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/run_events_analysis.py", 
> line 171, in check_gff_and_bam
>     miso_logger.warning("It looks like your GFF annotation file and 
> your BAM " \
> NameError: global name 'miso_logger' is not defined
>
>
> Thanks. I look forward to hear back from you soon.
>
> Regards
> Ankit
>
> Am 30.03.2015 um 14:22 schrieb Yarden Katz:
>> ng 0.5.3 and remove
>
>


-- 
Ankit Arora
Bioinformatics / Research
T +49 30 3 19 89 66 25 | F -19
arora at atlas-biolabs.com

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