[miso-users] Accounting for batch effects

[Singh, Larry (NIH/NHGRI) [E]]

Dear MISO users,

I'm new to MISO, but would like to use it for differential expression and eQTL analyses of a large number of samples.  Initial analyses have shown though that there are likely batch effects.  Is there a method in MISO for accounting for batch effects?  I've searched the web and the miso-users archives and couldn't find an answer.

Thank you kindly for your attention.
-Larry.

--
Larry N. Singh, Ph.D.
Research Fellow
Genetic Diseases Research Branch
National Human Genome Research Institute, NIH
Building 49, Room 4A52
49 Convent Dr., Bethesda, MD 20892-8004
(301) 451-4699