[miso-users] MISO installation issue

[Zhou Qi]

Dear MISO-users:

I have a silly question about installing MISO on a linux cluster. When I test the installation or test the MISO run, I can pass with root account but not with certain user's account. It says:

"Looking for required Python modules..
Checking for availability of: numpy
  - Module numpy not available!
Checking for availability of: scipy
  - Module scipy not available!
Checking for availability of: json
Checking for availability of: matplotlib
  - Module matplotlib not available!
matplotlib is required for sashimi_plot
Checking for availability of: pysam
Total of 3 modules were not available. Please install these and try again.
Looking for required executables..
Checking if samtools is available
  - samtools is available
Checking if bedtools is available
  - bedtools is available"


"Traceback (most recent call last):
  File "test_miso.py", line 7, in <module>
    import sam_utils
  File "/jbods/data00/zhouqi/soft/misopy-0.4.9/misopy/sam_utils.py", line 8, in <module>
    from misopy.Gene import load_genes_from_gff
  File "/usr/local/lib/python2.7/site-packages/misopy/Gene.py", line 2, in <module>
    from scipy import *
  File "/usr/local/lib/python2.7/site-packages/scipy/__init__.py", line 64, in <module>
    from numpy import show_config as show_numpy_config
  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 137, in <module>
    import add_newdocs
  File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 4, in <module>
    from type_check import *
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 8, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 5, in <module>
    import multiarray
ImportError: /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so: undefined symbol: PyOS_string_to_double"


Can someone tell me how to add the dependent and miso packages into my path?

Thanks a lot!

Qi