[miso-users] isoforms in plants

[Yarden Katz]

Hi Elsa,

MISO is not specific to any genome and does not rely on any features of the human/mouse genomes.  It will quantitate any annotation you provide it, with any genome's BAM file.  All you need is an annotation of plant isoforms in GFF format.

Best, --Yarden




On Apr 26, 2013, at 5:16 PM, Elsa Gongora wrote:

> Dear MISO users,
> 
> I've been reading about MISO and I'm attempting to use it to analyze isoforms in plants specifically in corn. I understand MISO has been developed based on human and mice models for that reason I am not sure if this is the right tool for my project. Any thoughts or suggestion would be appreciated.
> 
> Thanks!
> Elsa
> 
> 
> 
> _______________
> Elsa Gongora, PhD
> 
> Department of Plant Biology
> Michigan State University
> Plant Biology Laboratories
> 612 Wilson Road, Rm 166
> East Lansing, MI 48824
> Phone: (517)-353-5597
> Fax:(517)-353-1926
> e-mail: casti111 at msu.edu
> http://buell-lab.plantbiology.msu.edu
> 
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