[miso-users] apparent errors in misopy test_miso.py file locations
Yarden Katz
yarden at MIT.EDU
Tue Oct 9 10:56:06 EDT 2012
Hi David,
Thanks for this report -- it is fixed in the GitHub repository now, and will be incorporated into the next release.
Best, --Yarden
On Oct 8, 2012, at 6:32 PM, David Quigley wrote:
> Hi folks,
>
> I just installed the latest misopy and found two errors in the test_miso script that are caused by file locations errors. Presumably the directory structure changed and the test script didn't follow along. I've corrected them below to point out the locations:
>
> self.test_sam_filename = os.path.join(self.tests_data_dir,
> # "sam-data",
> "c2c12.Atp2b1.sam")
>
> # First index the GFF of interest
> # gff_filename = os.path.join(self.gff_events_dir, "mm9", "genes", "Atp2b1.mm9.gff")
> gff_filename = os.path.join(self.gff_events_dir, "Atp2b1.mm9.gff")
>
> Best regards,
>
> David Quigley
>
>
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