[miso-users] MISO aborts with error *** glibc detected *** python: free(): invalid pointer

[Anke Busch]

Hello again,

I updated all modules and packages (except I'm still using python2.6), 
but nothing changed. Then I set

export MALLOC_CHECK_=0

which changed the output to the following:

.....
.....
Computing Psi for 1 genes...
   - ENSMUSG00000019943
   - GFF filename: 
/home/anke/Software/src/misopy-0.4.1/misopy/gff-events/mm9/genes/Atp2b1/indexed/chr10/ENSMUSG00000019943.pickle
   - BAM: 
/home/anke/Software/src/misopy-0.4.1/misopy/test-output/sam-output/c2c12.Atp2b1.sorted.bam
   - Outputting to: 
/home/anke/Software/src/misopy-0.4.1/misopy/test-output/gene-psi-output
Loading BAM filename from: 
/home/anke/Software/src/misopy-0.4.1/misopy/test-output/sam-output/c2c12.Atp2b1.sorted.bam
Loading took 0.00 seconds
Segmentation fault
.
----------------------------------------------------------------------
Ran 2 tests in 3.822s

OK

So at least something changed, but there's still a segmentation fault 
which causes a crash.
Would be great, if anyone would have an idea on that...

Thanks,
Anke.

-- 
******************************************
   Dr. Anke Busch
   Postdoctoral Researcher
   Department of Microbiology and Molecular Genetics
   Medical Sciences I, C290
   University of California, Irvine, USA

   Email: abusch at uci.edu
   Phone: +1-949-824-2128
******************************************