[miso-users] MISO installation problem

[Yarden Katz]

Hi Tony,

Can you let me know how you installed MISO exactly?  Was it from GitHub or Pypi?  

Did the compilation process invoked by "python setup.py install" go through with no errors?

Finally, are you able to do the following with no errors:

$ python
>> import pysplicing

  --Yarden

On Feb 17, 2012, at 2:52 AM, Tony wrote:

> Dear Yarden Katz
> 
> Thanks for your effort for the MISO.
> 
> Recently, I encountered some problem when I want to install MISO command "python test_miso.py". The warning message is :
> 
> .Traceback (most recent call last):
>   File "/ifs-accel/liutao/software/src/MISO/misopy-0.4/misopy/run_miso.py", line 588, in <module>
>     main()
>   File "/ifs-accel/liutao/software/src/MISO/misopy-0.4/misopy/run_miso.py", line 542, in main
>     event_type=options.event_type)
>   File "/ifs-accel/liutao/software/src/MISO/misopy-0.4/misopy/run_miso.py", line 378, in compute_gene_psi
>     lag=lag)
>   File "/ifs-accel/apps/python/lib/python2.7/site-packages/misopy/miso_sampler.py", line 243, in run_sampler
>     c_gene = py2c_gene(gene)
>   File "/ifs-accel/apps/python/lib/python2.7/site-packages/misopy/py2c_gene.py", line 21, in py2c_gene
>     c_gene = pysplicing.createGene(CMISO_exon_lens,
> AttributeError: 'module' object has no attribute 'createGene'
> 
> The MISO version is 0.40 and I can not figure out the problem for a long time.
> 
> Would you mind to point the problem? Thank you very much!
> 
> Regards,
> Tony
> 
> -- 
> 
> Sincerely,
> 
> Tao Liu
> 
> Li Ka Shing Institute of Health Sciences
> The Chinese University of Hong Kong
>  
> Tel.+852-37636015
> 
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