[miso-users] Error from sashimi-plot on test-data

[Yarden Katz]

Hi, 

Could you please say what command you ran exactly, and using what settings file?

Thanks.  --Yarden

On Nov 5, 2012, at 11:17 AM, In-Hee Lee wrote:

> Hi miso-users,
> 
> I have installed latest version of MISO, and tested installation using test-data.
> But sashimi-plot gave me an unexpected error.
> It looks like settings for graph margin in matplotlib is involved, but I can't figure out how to fix it.
> It would be great if somebody can give me an insight to fix it.
> 
> Thanks,
> 
> -------------------------------------------------------------------------------------------------------------
> The python package versions are: python-2.6, matplotlib-1.1.1, numpy-1.8.0dev, scipy-0.12.0
> 
> The traceback from error message is:
> Traceback (most recent call last):
>   File "./plot.py", line 319, in <module>
>     main()
>   File "./plot.py", line 314, in main
>     no_posteriors=no_posteriors)
>   File "./plot.py", line 145, in plot_event
>     no_posteriors=no_posteriors)
>   File "/usr/lib/python2.6/site-packages/misopy-0.4.6-py2.6-linux-x86_64.egg/misopy/sashimi_plot/plot_utils/plot_gene.py", line 665, in plot_density_from_file
>     plot_density(sashimi_obj, pickle_filename, event)
>   File "/usr/lib/python2.6/site-packages/misopy-0.4.6-py2.6-linux-x86_64.egg/misopy/sashimi_plot/plot_utils/plot_gene.py", line 235, in plot_density
>     junction_log_base=junction_log_base)
>   File "/usr/lib/python2.6/site-packages/misopy-0.4.6-py2.6-linux-x86_64.egg/misopy/sashimi_plot/plot_utils/plot_gene.py", line 70, in plot_density_single
>     y2=0, color=color, lw=0)
>   File "/usr/lib64/python2.6/site-packages/matplotlib/pyplot.py", line 2287, in fill_between
>     ret = ax.fill_between(x, y1, y2, where, interpolate, **kwargs)
>   File "/usr/lib64/python2.6/site-packages/matplotlib/axes.py", line 6564, in fill_between
>     self.add_collection(collection)
>   File "/usr/lib64/python2.6/site-packages/matplotlib/axes.py", line 1445, in add_collection
>     self.update_datalim(collection.get_datalim(self.transData))
>   File "/usr/lib64/python2.6/site-packages/matplotlib/collections.py", line 167, in get_datalim
>     offsets.shape = (-1, 2)                     # Make it Nx2
> AttributeError: incompatible shape for a non-contiguous array
> 
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