[miso-users] sashimi_plot,--plot-posterior question

[=?gb2312?B?sKzZu8jj?=]

Dear Sir:

         I got some problems when I use --plot-posterior of sashimi_plot to
draw the pictures. Unlike the web document, the --plot-posterior need two
arguments:

       --plot-posterior=PLOT_POSTERIOR

                        Plot the posterior distribution. Takes the
arguments:

                        (1) a raw MISO output file (.miso), (2) a settings

                        filename.

When I run the command I got following message:

python plot.py --plot-posterior
"test-data/miso-data/heartKOa/chr17/chr17:45816186:45816265:- at chr17:458159

12:45815950:- at chr17:45814875:45814965:-.miso"
settings/sashimi_plot_settings.txt --output-dir test-plot/

 

/usr/local/lib/python2.6/dist-packages/mpl_toolkits/__init__.py:2:
UserWarning: Module dateutil was already imported from
/usr/local/lib/python2.6/dist-packages/dateutil/__init__.pyc, but
/usr/lib/pymodules/python2.6 is being added to sys.path

  __import__('pkg_resources').declare_namespace(__name__)

/usr/local/lib/python2.6/dist-packages/numpy/lib/npyio.py:1261:
DeprecationWarning: The use of `skiprows` is deprecated, it will be removed
in numpy 2.0.

Please use `skip_header` instead.

  DeprecationWarning)

Traceback (most recent call last):

  File "plot.py", line 282, in <module>

    main()

  File "plot.py", line 267, in main

    plot_posterior(miso_filename, settings_filename, output_dir)

  File "plot.py", line 195, in plot_posterior

    if with_intervals != None:

UnboundLocalError: local variable 'with_intervals' referenced before
assignment

 

Waiting for you help, thank you very much!

 

Best Wishes

Amy AI

 

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