[galib] galib Digest, Vol 63, Issue 5
yi.zong@risoe.dk
yi.zong at risoe.dk
Wed Oct 8 06:48:55 EDT 2008
Dear Patrick,
Thank you for your help.
I had changed double to float in Myinitializer. But it is still not working.
It seems that the Program never calls Myinitializer and without ga.initialize(), so it specified the first generation's individuals as 0.
Anybody has solution?
Thanks
Yi Zong
Post doc
Phone direct +45 4677 5045
Mobile
yi.zong at risoe.dk
Wind Energy Department
Risø National Laboratory for Sustainable Energy
Technical University of Denmark - DTU
Building 118, P.O. Box 49
DK-4000 Roskilde, Denmark
Tel +45 4677 4677
Fax +45 4677 5083
www.risoe.dtu.dk
________________________________
From: Patrick Coquillard [mailto:patrick.coquillard at unice.fr]
Sent: Wednesday, October 08, 2008 12:24 PM
To: yi.zong at risoe.dk
Subject: Re: [galib] galib Digest, Vol 63, Issue 5
Dera Yi,
Here is your initializer :
void Myinitializer( GAGenome &g )
{
GARealGenome &genome = (GARealGenome &)g;
double IC[]={-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2,-19.2};
for( int i = 0; i < 36; ++i )
{
genome.gene(i, IC[i]);
}
}
But, the declaration of GAAlleleSetArray is :
typedef GAAlleleSetArray<float> GARealAlleleSetArray;
Try to initialize your genome with float instead of double ?
regards, P.
yi.zong at risoe.dk a écrit :
Dear all,
I still can not solve my problem. (Initializer: first generation
always are zeros, not a real number!)
Could you give me any idea?
Thank you for your help!
Yi
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Today's Topics:
1. Re: Help: Initializer: first generation always are zeros, not
a real number! (Kupfer, Michael (ARC-AFA)[UC SANTA CRUZ])
----------------------------------------------------------------------
Message: 1
Date: Fri, 3 Oct 2008 12:25:26 -0500
From: "Kupfer, Michael (ARC-AFA)[UC SANTA CRUZ]"
<Michael.Kupfer at nasa.gov> <mailto:Michael.Kupfer at nasa.gov>
Subject: Re: [galib] Help: Initializer: first generation always are
zeros, not a real number!
To: <yi.zong at risoe.dk> <mailto:yi.zong at risoe.dk> , <galib at mit.edu> <mailto:galib at mit.edu>
Message-ID:
<87D67DA289F034488A9D7E4CDEFD28CC98CB08 at NDMSEVS34B.ndc.nasa.gov> <mailto:87D67DA289F034488A9D7E4CDEFD28CC98CB08 at NDMSEVS34B.ndc.nasa.gov>
Content-Type: text/plain; charset="iso-8859-1"
Hello Yi!
I took GAlib example1 and added an own initializer.
With it (line 41) one now can set the first genes either to 0 or to 1.
Try to go from there.
Best,
Michael.
--------------------------------------------------
Michael Kupfer
University Affiliated Research Center
UC Santa Cruz
NASA Ames Research Center
Building 210, Room 255, Mail Stop 210-6
Moffett Field, CA 94035
U.S.A.
Email: Michael.Kupfer AT nasa.gov <mailto:Michael.Kupfer at nasa.gov> <mailto:Michael.Kupfer at nasa.gov>
Phone: (650)604-6424
/*
------------------------------------------------------------------------
----
ex1.C
mbwall 28jul94
Copyright (c) 1995-1996 Massachusetts Institute of Technology
DESCRIPTION:
Example program for the SimpleGA class and 2DBinaryStringGenome
class.
This program tries to fill the 2Dgenome with alternating 1s and 0s.
This example uses the default crossover (single point), default
mutator
(uniform random bit flip), and default initializer (uniform random) for
the
2D genome.
Notice that one-point crossover is not necessarily the best kind of
crossover
to use if you want to generate a 'good' genome with this kind of
objective
function. But it does work.
------------------------------------------------------------------------
---- */
#include <ga/GASimpleGA.h> // we're going to use the simple GA
#include <ga/GA2DBinStrGenome.h> // and the 2D binary string genome
#include <ga/std_stream.h>
#define cout STD_COUT
void MyInitializer(GAGenome & g);
float Objective(GAGenome &); // This is the declaration of our obj
function.
// The definition comes later in the file.
int k = 0;
//------------------- own initializer---------------------
void MyInitializer(GAGenome & g)
{
//cout << "Hello" <<endl;
GA2DBinaryStringGenome & genome = (GA2DBinaryStringGenome &)g;
for(int j=0; j<genome.height(); j++)
{
for(int i=0; i<genome.width(); i++)
{
genome.gene(i,j,1); // to set the genes with
which the population gets initialized: either 1 or 0
// stupid example;
I should have taken one where one can seed it also with non binary
values
}
}
}
//---------------------end of own initializer--------------------------
int
main(int argc, char **argv)
{
cout << "Example 1\n\n";
cout << "This program tries to fill a 2DBinaryStringGenome with\n";
cout << "alternating 1s and 0s using a SimpleGA\n\n"; cout.flush();
// See if we've been given a seed to use (for testing purposes). When
you
// specify a random seed, the evolution will be exactly the same each
time
// you use that seed number.
for(int ii=1; ii<argc; ii++) {
if(strcmp(argv[ii++],"seed") == 0) {
GARandomSeed((unsigned int)atoi(argv[ii]));
}
}
// Declare variables for the GA parameters and set them to some default
values.
int width = 10;
int height = 5;
int popsize = 10;
int ngen = 200;
float pmut = 0.001;
float pcross = 0.9;
// Now create the GA and run it. First we create a genome of the type
that
// we want to use in the GA. The ga doesn't operate on this genome in
the
// optimization - it just uses it to clone a population of genomes.
GA2DBinaryStringGenome genome(width, height, Objective);
genome.initializer(MyInitializer);
// Now that we have the genome, we create the genetic algorithm and set
// its parameters - number of generations, mutation probability, and
crossover
// probability. And finally we tell it to evolve itself.
GASimpleGA ga(genome);
ga.populationSize(popsize);
ga.nGenerations(ngen);
ga.pMutation(pmut);
ga.pCrossover(pcross);
ga.evolve();
// Now we print out the best genome that the GA found.
cout << "The GA found:\n" << ga.statistics().bestIndividual() << "\n";
// That's it!
return 0;
}
// This is the objective function. All it does is check for alternating
0s and
// 1s. If the gene is odd and contains a 1, the fitness is incremented
by 1.
// If the gene is even and contains a 0, the fitness is incremented by
1. No
// penalties are assigned.
// We have to do the cast because a plain, generic GAGenome doesn't
have
// the members that a GA2DBinaryStringGenome has. And it's ok to cast
it
// because we know that we will only get GA2DBinaryStringGenomes and
// nothing else.
float
Objective(GAGenome& g) {
GA2DBinaryStringGenome & genome = (GA2DBinaryStringGenome &)g;
float score=0.0;
int count=0;
if(k < 40) // print out the first few generations to see
how the genome looks like
{
for(int j=0; j<genome.height(); j++)
{
for(int i=0; i<genome.width(); i++)
{
cout << genome.gene(i,j);
}
cout << endl;
}
cout << endl;
}
for(int i=0; i<genome.width(); i++){
for(int j=0; j<genome.height(); j++){
if(genome.gene(i,j) == 0 && count%2 == 0)
score += 1.0;
if(genome.gene(i,j) == 1 && count%2 != 0)
score += 1.0;
count++;
}
}
k++;
return score;
}
________________________________
From: galib-bounces at mit.edu [mailto:galib-bounces at mit.edu] On Behalf Of
yi.zong at risoe.dk
Sent: Friday, October 03, 2008 3:12 AM
To: galib at mit.edu
Subject: [galib] Help: Initializer: first generation always are zeros,
not a real number!
Dear Michael, Patrik and all,
I have tried your suggestion, but it still has the problem: the first
generation's individuals always are zeros, not a real number that I
expect!
Could you give me some other suggestion?
Thank you in advance,
Yi
Yi Zong
Post doc
Phone direct +45 4677 5045
Mobile
yi.zong at risoe.dk
Wind Energy Department
Ris? National Laboratory for Sustainable Energy
Technical University of Denmark - DTU
Building 118, P.O. Box 49
DK-4000 Roskilde, Denmark
Tel +45 4677 4677
Fax +45 4677 5083
www.risoe.dtu.dk
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