[Dspace-general] Error after updating Dspace 1.4.2 to 1.5.0

BAILLY, Vincent Vincent.BAILLY at inist.fr
Thu May 22 10:03:27 EDT 2008 

Hello,
 
I m calling for some helps, plz.
I m currently trying to update our old version of dspace, the 1.4.2 to
the 1.5.0
I installed both and both work the 1.4.2 with the DB and the second
without.
So i follow the instructions of the documantions.
Every things seems to go for the best but at the end when i try to
launch dspace i ve this error.
 
  

An error has occured


java.sql.SQLException: java.lang.NullPointerException

Cocoon stacktrace [hide] 

Failed to process pipeline 
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/asp
ects/aspects.xmap - 115:34	 <map:serialize type="xml"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/asp
ects/aspects.xmap - 114:43	 <map:transform type="PageNotFound"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/asp
ects/aspects.xmap - 113:22	 <map:generate> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 184:34	 <map:serialize type="xhtml"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 181:84	 <map:transform
type="NamespaceFilter"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 180:78	 <map:transform
type="NamespaceFilter"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 174:33	 <map:transform type="i18n"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 170:44	 <map:transform> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 155:45	 <map:transform
type="IncludePageMeta"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/Reference/sitemap.xmap - 131:55	 <map:generate type="file"> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/the
mes/themes.xmap - 63:45	 <map:mount> 	
context:/file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/sit
emap.xmap - 325:73	 <map:mount> 	


Java stacktrace [hide] 

java.sql.SQLException: java.lang.NullPointerException
	at
org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java
:1555)
	at
org.dspace.storage.rdbms.DatabaseManager.getConnection(DatabaseManager.j
ava:512)
	at org.dspace.core.Context.<init>(Context.java:117)
	at
org.dspace.app.xmlui.utils.ContextUtil.obtainContext(ContextUtil.java:88
)
	at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.setup(AbstractDSpa
ceTransformer.java:111)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPi
peline(AbstractProcessingPipeline.java:397)
	at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipe
line.setupPipeline(AbstractCachingProcessingPipeline.java:720)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Pipeline(AbstractProcessingPipeline.java:500)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Internal(AbstractProcessingPipeline.java:514)
	at
org.apache.cocoon.components.source.impl.SitemapSource.init(SitemapSourc
e.java:341)
	at
org.apache.cocoon.components.source.impl.SitemapSource.<init>(SitemapSou
rce.java:213)
	at
org.apache.cocoon.components.source.impl.SitemapSourceFactory.getSource(
SitemapSourceFactory.java:64)
	at
org.apache.excalibur.source.impl.SourceResolverImpl.resolveURI(SourceRes
olverImpl.java:208)
	at
org.apache.cocoon.components.CocoonComponentManager.resolveURI(CocoonCom
ponentManager.java:541)
	at
org.apache.cocoon.environment.AbstractEnvironment.resolveURI(AbstractEnv
ironment.java:552)
	at
org.apache.cocoon.environment.AbstractEnvironment.resolveURI(AbstractEnv
ironment.java:539)
	at
org.apache.cocoon.generation.FileGenerator.setup(FileGenerator.java:78)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPi
peline(AbstractProcessingPipeline.java:384)
	at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipe
line.setupPipeline(AbstractCachingProcessingPipeline.java:720)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Pipeline(AbstractProcessingPipeline.java:500)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.process
(AbstractProcessingPipeline.java:452)
	at
org.apache.cocoon.components.treeprocessor.sitemap.SerializeNode.invoke(
SerializeNode.java:120)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:46)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PreparableMatchNode.i
nvoke(PreparableMatchNode.java:130)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(Moun
tNode.java:117)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:46)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(Matc
hNode.java:107)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(Moun
tNode.java:117)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at org.apache.cocoon.Cocoon.process(Cocoon.java:686)
	at
org.apache.cocoon.servlet.CocoonServlet.service(CocoonServlet.java:1153)
	at
org.dspace.app.xmlui.cocoon.DSpaceCocoonServlet.service(DSpaceCocoonServ
let.java:215)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
	at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:252)
	at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:173)
	at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv
e.java:213)
	at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv
e.java:178)
	at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java
:126)
	at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java
:105)
	at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:541
)
	at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.
java:107)
	at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:1
48)
	at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:86
9)
	at
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.proc
essConnection(Http11BaseProtocol.java:664)
	at
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint
.java:527)
	at
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollow
erWorkerThread.java:80)
	at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool
.java:684)
	at java.lang.Thread.run(Thread.java:595)


Java full stacktrace [hide] 

org.apache.cocoon.ProcessingException: Failed to process pipeline
	at <map:serialize type="xml"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/aspects/aspe
cts.xmap:115:34
	at <map:transform type="PageNotFound"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/aspects/aspe
cts.xmap:114:43
	at <map:generate> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/aspects/aspe
cts.xmap:113:22
	at <map:serialize type="xhtml"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:184:34
	at <map:transform type="NamespaceFilter"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:181:84
	at <map:transform type="NamespaceFilter"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:180:78
	at <map:transform type="i18n"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:174:33
	at <map:transform> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:170:44
	at <map:transform type="IncludePageMeta"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:155:45
	at <map:generate type="file"> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/Refer
ence/sitemap.xmap:131:55
	at <map:mount> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/themes/theme
s.xmap:63:45
	at <map:mount> -
file:/applis/irevues/home/dspace-1.4.2/tomcat/webapps/xmlui/sitemap.xmap
:325:73
	at
org.apache.cocoon.ProcessingException.throwLocated(ProcessingException.j
ava:144)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.handleE
xception(AbstractProcessingPipeline.java:951)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPi
peline(AbstractProcessingPipeline.java:413)
	at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipe
line.setupPipeline(AbstractCachingProcessingPipeline.java:720)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Pipeline(AbstractProcessingPipeline.java:500)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Internal(AbstractProcessingPipeline.java:514)
	at
org.apache.cocoon.components.source.impl.SitemapSource.init(SitemapSourc
e.java:341)
	at
org.apache.cocoon.components.source.impl.SitemapSource.<init>(SitemapSou
rce.java:213)
	at
org.apache.cocoon.components.source.impl.SitemapSourceFactory.getSource(
SitemapSourceFactory.java:64)
	at
org.apache.excalibur.source.impl.SourceResolverImpl.resolveURI(SourceRes
olverImpl.java:208)
	at
org.apache.cocoon.components.CocoonComponentManager.resolveURI(CocoonCom
ponentManager.java:541)
	at
org.apache.cocoon.environment.AbstractEnvironment.resolveURI(AbstractEnv
ironment.java:552)
	at
org.apache.cocoon.environment.AbstractEnvironment.resolveURI(AbstractEnv
ironment.java:539)
	at
org.apache.cocoon.generation.FileGenerator.setup(FileGenerator.java:78)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPi
peline(AbstractProcessingPipeline.java:384)
	at
org.apache.cocoon.components.pipeline.impl.AbstractCachingProcessingPipe
line.setupPipeline(AbstractCachingProcessingPipeline.java:720)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.prepare
Pipeline(AbstractProcessingPipeline.java:500)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.process
(AbstractProcessingPipeline.java:452)
	at
org.apache.cocoon.components.treeprocessor.sitemap.SerializeNode.invoke(
SerializeNode.java:120)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:46)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PreparableMatchNode.i
nvoke(PreparableMatchNode.java:130)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(Moun
tNode.java:117)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:46)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MatchNode.invoke(Matc
hNode.java:107)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at
org.apache.cocoon.components.treeprocessor.sitemap.MountNode.invoke(Moun
tNode.java:117)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelineNode.invoke(P
ipelineNode.java:142)
	at
org.apache.cocoon.components.treeprocessor.AbstractParentProcessingNode.
invokeNodes(AbstractParentProcessingNode.java:68)
	at
org.apache.cocoon.components.treeprocessor.sitemap.PipelinesNode.invoke(
PipelinesNode.java:92)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:234)
	at
org.apache.cocoon.components.treeprocessor.ConcreteTreeProcessor.process
(ConcreteTreeProcessor.java:176)
	at
org.apache.cocoon.components.treeprocessor.TreeProcessor.process(TreePro
cessor.java:252)
	at org.apache.cocoon.Cocoon.process(Cocoon.java:686)
	at
org.apache.cocoon.servlet.CocoonServlet.service(CocoonServlet.java:1153)
	at
org.dspace.app.xmlui.cocoon.DSpaceCocoonServlet.service(DSpaceCocoonServ
let.java:215)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
	at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:252)
	at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:173)
	at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv
e.java:213)
	at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv
e.java:178)
	at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java
:126)
	at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java
:105)
	at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:541
)
	at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.
java:107)
	at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:1
48)
	at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:86
9)
	at
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.proc
essConnection(Http11BaseProtocol.java:664)
	at
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint
.java:527)
	at
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollow
erWorkerThread.java:80)
	at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool
.java:684)
	at java.lang.Thread.run(Thread.java:595)
Caused by: java.sql.SQLException: java.lang.NullPointerException
	at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.handleException(Ab
stractDSpaceTransformer.java:140)
	at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.setup(AbstractDSpa
ceTransformer.java:124)
	at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPi
peline(AbstractProcessingPipeline.java:397)
	... 62 more
Caused by: java.sql.SQLException: java.lang.NullPointerException
	at
org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java
:1555)
	at
org.dspace.storage.rdbms.DatabaseManager.getConnection(DatabaseManager.j
ava:512)
	at org.dspace.core.Context.<init>(Context.java:117)
	at
org.dspace.app.xmlui.utils.ContextUtil.obtainContext(ContextUtil.java:88
)
	at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.setup(AbstractDSpa
ceTransformer.java:111)
	... 63 more

Does anybody can help me ?
Thanks. Vincent Bailly
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