From alanqi at csail.mit.edu Fri Feb 18 15:40:47 2005 From: alanqi at csail.mit.edu (Alan Qi) Date: Fri, 18 Feb 2005 15:40:47 -0500 Subject: [CSBi-HPC] how to run jobs in the cluster? Message-ID: <421652CF.5060703@csail.mit.edu> Hi, I'm wondering how to run multiple matlab jobs on the CSBi clusters. Do you simply starting a few matlab enviroments and run jobs separately in each matlab enviroment, or user "llsubmit" to submit the matlab jobs? Based on the knowledge I got from my google search, I wrote the following myjob.cmb and used "llsubmit myjob.cmd" to submit the job. However it didn't work. All I got is the following: ********************************** llsubmit: Processed command file through Submit Filter: "/opt/nebiogrid/loadl/util/submit-filter.pl". llsubmit: 2512-354 The ENFORCE_RESOURCE_SUBMISSION keyword is true, ConsumableCpus is required in the job's "resources" keyword. llsubmit: 2512-051 This job has not been submitted to LoadLeveler. **************************************************** Could someone share his or her knowledge and help me on this problem? Thanks a lot!! Alan P.S. myjob.cmb: # @ job_type = parallel # @ environment = LL_JOB=TRUE # @ notification = always # Notification value should be set to either: # always - User notified when job begins, ends, or fails # complete - User notified when job ends # @ notify_user = alanqi at csail.mit.edu # Email address to which notification is sent to. # @ queue # # Submit Matlab M-file myjob.m as batch file to Matlab and send any # terminal output to file named myjob.out. matlab -nodesktop -r "benchmarktime;exit" > myjob2.out From karens at MIT.EDU Fri Feb 18 17:13:00 2005 From: karens at MIT.EDU (Karen Sachs) Date: Fri, 18 Feb 2005 17:13:00 -0500 (EST) Subject: [CSBi-HPC] how to run jobs in the cluster? In-Reply-To: <421652CF.5060703@csail.mit.edu> References: <421652CF.5060703@csail.mit.edu> Message-ID: I can't understand what is wrong, but I can suggest compiling your matlab code..it might make things run smoother (doesn't require license files and so on). I can help with compiling if you need it. Good luck! Karen On Fri, 18 Feb 2005, Alan Qi wrote: > Hi, > > I'm wondering how to run multiple matlab jobs on the CSBi clusters. Do > you simply starting a few matlab enviroments and run jobs separately in > each matlab enviroment, or user "llsubmit" to submit the matlab jobs? > > Based on the knowledge I got from my google search, I wrote the > following myjob.cmb and used "llsubmit myjob.cmd" to submit the job. > However it didn't work. All I got is the following: > ********************************** > llsubmit: Processed command file through Submit Filter: > "/opt/nebiogrid/loadl/util/submit-filter.pl". > llsubmit: 2512-354 The ENFORCE_RESOURCE_SUBMISSION keyword is true, > ConsumableCpus is required in the job's "resources" keyword. > llsubmit: 2512-051 This job has not been submitted to LoadLeveler. > **************************************************** > > Could someone share his or her knowledge and help me on this problem? > > Thanks a lot!! > > Alan > > P.S. myjob.cmb: > > # @ job_type = parallel > # @ environment = LL_JOB=TRUE > # @ notification = always > # Notification value should be set to either: > # always - User notified when job begins, ends, or fails > # complete - User notified when job ends > # @ notify_user = alanqi at csail.mit.edu > # Email address to which notification is sent to. > # @ queue > # > # Submit Matlab M-file myjob.m as batch file to Matlab and send any > # terminal output to file named myjob.out. > > matlab -nodesktop -r "benchmarktime;exit" > myjob2.out > _______________________________________________ > CSBi-HPC-users mailing list > CSBi-HPC-users at mit.edu > http://mailman.mit.edu/mailman/listinfo/csbi-hpc-users > From edelman at math.mit.edu Sat Feb 19 07:24:23 2005 From: edelman at math.mit.edu (edelman@math.mit.edu) Date: Sat, 19 Feb 2005 07:24:23 -0500 (EST) Subject: [CSBi-HPC] how to run jobs in the cluster? In-Reply-To: <421652CF.5060703@csail.mit.edu> from "Alan Qi" at Feb 18, 2005 03:40:47 PM Message-ID: <200502191224.j1JCONa03954@pythagoras.mit.edu> Is this a good time to tell people about Matlab star-p? > > Hi, > > I'm wondering how to run multiple matlab jobs on the CSBi clusters. Do > you simply starting a few matlab enviroments and run jobs separately in > each matlab enviroment, or user "llsubmit" to submit the matlab jobs? > > Based on the knowledge I got from my google search, I wrote the > following myjob.cmb and used "llsubmit myjob.cmd" to submit the job. > However it didn't work. All I got is the following: > ********************************** > llsubmit: Processed command file through Submit Filter: > "/opt/nebiogrid/loadl/util/submit-filter.pl". > llsubmit: 2512-354 The ENFORCE_RESOURCE_SUBMISSION keyword is true, > ConsumableCpus is required in the job's "resources" keyword. > llsubmit: 2512-051 This job has not been submitted to LoadLeveler. > **************************************************** > > Could someone share his or her knowledge and help me on this problem? > > Thanks a lot!! > > Alan > > P.S. myjob.cmb: > > # @ job_type = parallel > # @ environment = LL_JOB=TRUE > # @ notification = always > # Notification value should be set to either: > # always - User notified when job begins, ends, or fails > # complete - User notified when job ends > # @ notify_user = alanqi at csail.mit.edu > # Email address to which notification is sent to. > # @ queue > # > # Submit Matlab M-file myjob.m as batch file to Matlab and send any > # terminal output to file named myjob.out. > > matlab -nodesktop -r "benchmarktime;exit" > myjob2.out > _______________________________________________ > CSBi-HPC-users mailing list > CSBi-HPC-users at mit.edu > http://mailman.mit.edu/mailman/listinfo/csbi-hpc-users >