From csbi-events at mit.edu  Tue Apr 13 15:38:16 2004
From: csbi-events at mit.edu (csbi-events@mit.edu)
Date: Tue, 13 Apr 2004 15:38:16 -0400
Subject: [CSBi-events] Conference on Synthetic Biology - June 10-12
Message-ID: <5.2.1.1.2.20040413153731.03723ec0@po14.mit.edu>

FROM: Drew Endy

You are invited to the First Conference on Synthetic Biology that will take 
place June 10-12, 2004 at MIT; currently scheduled lectures are listed below.

If you would like to participate please register soon as possible as space 
is limited and we are planning to provide meals for all conferees.


Registration URL via:
http://conference.syntheticbiology.org/

Plenary Lectures:
Carlos Barbas, Scripps Research Institute
   "Designing Gene Switches & Reprogramming Cells and Organisms"
Frederick Blattner, University of Wisconsin Madison
   "Synthetic Biology: A Reduced Genome Approach"
James Collins, Boston University
   "Programmable Cells and Synthetic Gene Networks"
Michael Elowitz, Caltech
   "Noisy Machines: Gene Expression in Single Cell"
Homme Hellinga, Duke
   "The Role of Computation Protein Design in Synthetic Biology"
Jay Keasling, University of California Berkeley
   "Retooling Bacteria for Drug Production"
Tom Knight, MIT
   "Biological Simplicity"
Wendell Lim, University of California San Francisco,
   "Rewiring Cell Signaling Pathways"
John Mulligan, Blue Heron Biotechnology
   "DNA Synthesis: Genes Today, Genomes Tomorrow"
Radhika Nagpal, Harvard
   "Amorphous Computing - Pattern Formation in silicio"
Paul Rabinow, University of California Berkeley
    "Assembling Ethics in an Ecology of Ignorance"
Michael Savageau, University of California Davis
   "Design, Construction, and Refinement of Gene Circuitry"
Willem Stemmer, Avidia Research Institute
   "Design of Proteins, Pathways and Whole Genomes Using Natural 
Evolutionary Processes and Molecular Computation"
Ron Weiss, Princeton University
   "Engineering Digital, Analog and Transient Behavior in Individual Cells 
and Cell Communities"

Additional Speakers:
Roger Brent, Molecular Sciences
Tara O'Toole, UPMC Center for Biosecurity
George Poste, Arizona BioDesign Institute

DO NOT REPLY TO THIS E-MAIL

IF YOU HAVE  QUESTIONS, PLEASE RESPOND TO:
endy at mit.edu

Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
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Subject: [CSBi-events] Panel Discussion from CSBi Symposium
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Computational and Systems Biology 2nd Annual
Symposium on Systems Biology
 From Bioinformatics to Biofabrication presents

"Academic Perspectives: A Panel Discussion"

Moderated by
Douglas A. Lauffenburger
Whitaker Professor of Biological Engineering, Chemical Engineering, and Biology

Lauffenburger moderates a panel discussion with many of the participants 
from the symposium on what educators need to "get right" now to ensure the 
next generation of biologists will be prepared  to think and learn in systems.

http://mitworld.mit.edu/video/190/

Hosted by Computational and Systems Biology at MIT and co-sponsored by
MIT's Industrial Liaison Program (ILP)
The Cambridge-MIT Institute (CMI)
The Singapore-MIT Alliance (SMA)

Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
77 Massachusetts Avenue
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Subject: [CSBi-events] CSBi Seminar Series - This Friday, April 23
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CSBi Seminar Series

Probabilistic Models for Identifying Regulation Networks

Dr. Nir Friedman
Hebrew University, Israel


Friday, April 23, 2004
McGovern Auditorium
Whitehead Institute

3:00 PM

Host: Chris Burge

Contact: Alison Hearn x2-3885
http://csbi.mit.edu

Sponsored by CSBi

***PLEASE DO NOT REPLY TO THIS E-MAIL.  SEE CONTACT INFO ABOVE***


Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
77 Massachusetts Avenue
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CSBi High Performance Computing User Meeting

Speaker:        Austin Huang, Matsudaira & Lozano-Perez Labs
Title:          Computational Motion Analysis for Fluorescence Microscopy

Time:           5pm
Date:           Wednesday April 28th
Location:       NE47-189

Dinner will be served.

Please contact James G. Evans for further information.
jgevans at mit.edu
617 324 0300

Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
77 Massachusetts Avenue
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CSBi Seminar this Week!

Annotating the Human Genome, in terms of protein fossils
Dr. Mark Gerstein
Yale University

Friday, April 30, 2004
McGovern Auditorium
Whitehead Institute
3:00 PM

Host: Amy Keating

Contact: Brenda Pepe  617-452-2717

http://csbi.mit.edu
Sponsored by CSBi


Abstract:
A central problem for 21st century science will be the analysis and 
understanding of the human genome.  My talk will be concerned with topics 
within this area, in particular annotating pseudogenes (protein fossils) in 
the genome. I will discuss a comprehensive pseudogene identification 
pipeline and storage database we have built. This has enabled use to 
identify >10K pseudogenes in the human and mouse genomes and analyze their 
distribution with respect to age, protein family, chromosomal
location.  One interesting finding is the large number of ribosomal 
pseudogenes in the human genome, with 80 functional ribosomal proteins 
giving rise to ~2,000 ribosomal protein pseudogenes.  At end I will talk 
broadly about pseudogenes, in terms of their composition and mutation rates 
and I will compare pseudogenes in the human with those in a number of other 
model organisms, including worm, fly, yeast, and various prokaryotes. I 
will also talk about the problem of identifying pseudogenes in
relation to the overall problem of finding genes in genome.

http://bioinfo.mbb.yale.edu
http://pseudogene.org


-- 
PLEASE DO NOT RESPOND TO THIS E-MAIL, SEE CONTACT INFO ABOVE

Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
77 Massachusetts Avenue
Building 68 - Room 459
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CSBi Seminar Series, Spring 2004

A Combined Proteomic and Computational Approach to Protein Kinase Signaling 
in Cancer
Dr. Michael Yaffe
MIT Center for Cancer Research

  Friday, May 7, 2004
McGovern Auditorium
Whitehead Institute
3:00 PM


Contact: Alison Hearn x2-3885

Sponsored by CSBi
http://csbi.mit.edu



Dawn Davis Loring
Communications Coordinator
Computational and Systems Biology (CSBi)
Phone: (617) 324-0150
Fax: (617) 324-0081

Massachusetts Institute of Technology
77 Massachusetts Avenue
Building 68 - Room 459
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Hi Dawn,

We've recently added one additional speaker this spring -

Edward Cox from Princeton will speak on 5/21 at 3pm (usual time/place) on:

"The origins of large scale spatial order during morphogenesis in 
Dictyostelium"

Scott Manalis is his host (scottm at media.mit.edu).

Cheers,

Chris

>CSBi Seminar Series, Spring 2004
>
>A Combined Proteomic and Computational Approach to Protein Kinase 
>Signaling in Cancer
>Dr. Michael Yaffe
>MIT Center for Cancer Research
>
>  Friday, May 7, 2004
>McGovern Auditorium
>Whitehead Institute
>3:00 PM
>
>
>Contact: Alison Hearn x2-3885
>
>Sponsored by CSBi
>http://csbi.mit.edu
>
>
>
>Dawn Davis Loring
>Communications Coordinator
>Computational and Systems Biology (CSBi)
>Phone: (617) 324-0150
>Fax: (617) 324-0081
>
>Massachusetts Institute of Technology
>77 Massachusetts Avenue
>Building 68 - Room 459
>Cambridge, MA 02139 _______________________________________________
>CSBi-events mailing list
>CSBi-events at mit.edu
>http://mailman.mit.edu/mailman/listinfo/csbi-events


-- 
______________________________________________________________

Chris Burge                      http://genes.mit.edu/burgelab
                                         email : cburge at mit.edu
Assistant Professor                    office : (617) 258-5997
MIT Dept. of Biology                  dry lab : (617) 253-7039
77 Massachusetts Ave., 68-223         wet lab : (617) 253-6726
Cambridge, MA  02139                      fax : (617) 452-2936
_______________________________________________________________From kaywalsh at MIT.EDU Thu May  6 09:10:14 2004
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hey, does anyone have a flyer on this?

I haven't received one but I've see them posted on some of the boards 
around campus.

At 06:07 PM 5/5/2004, you wrote:

>Hi Dawn,
>
>We've recently added one additional speaker this spring -
>
>Edward Cox from Princeton will speak on 5/21 at 3pm (usual time/place) on:
>
>"The origins of large scale spatial order during morphogenesis in 
>Dictyostelium"
>
>Scott Manalis is his host (scottm at media.mit.edu).
>
>Cheers,
>
>Chris
>
>>CSBi Seminar Series, Spring 2004
>>
>>A Combined Proteomic and Computational Approach to Protein Kinase 
>>Signaling in Cancer
>>Dr. Michael Yaffe
>>MIT Center for Cancer Research
>>
>>  Friday, May 7, 2004
>>McGovern Auditorium
>>Whitehead Institute
>>3:00 PM
>>
>>
>>Contact: Alison Hearn x2-3885
>>
>>Sponsored by CSBi
>>http://csbi.mit.edu
>>
>>
>>
>>Dawn Davis Loring
>>Communications Coordinator
>>Computational and Systems Biology (CSBi)
>>Phone: (617) 324-0150
>>Fax: (617) 324-0081
>>
>>Massachusetts Institute of Technology
>>77 Massachusetts Avenue
>>Building 68 - Room 459
>>Cambridge, MA 02139 _______________________________________________
>>CSBi-events mailing list
>>CSBi-events at mit.edu
>>http://mailman.mit.edu/mailman/listinfo/csbi-events
>
>
>--
>______________________________________________________________
>
>Chris Burge                      http://genes.mit.edu/burgelab
>                                         email : cburge at mit.edu
>Assistant Professor                    office : (617) 258-5997
>MIT Dept. of Biology                  dry lab : (617) 253-7039
>77 Massachusetts Ave., 68-223         wet lab : (617) 253-6726
>Cambridge, MA  02139                      fax : (617) 452-2936
>______________________________________________________________
>_______________________________________________
>CSBi-events mailing list
>CSBi-events at mit.edu
>http://mailman.mit.edu/mailman/listinfo/csbi-events

****************************************************
Kay Walsh
Assistant to Professor Leona Samson, Director
Center for Environmental Health Sciences
Massachusetts Institute of Technology
Bldg. 56-235
Phone: 617-253-6220 Fax: 617-452-2066
kaywalsh at mit.edu