<div dir="ltr">It's a problem the visualizer has with the time format of the log. I fixed the issue by changing the line, hardcoding in +00:00.<div>Changing</div><div><span style="color:rgb(0,0,0);font-size:12.8000001907349px">a = [datetime.strptime(parts[0], '%Y-%m-%d %H:%M:%S.%f'),</span></div><div><font color="#000000"><span style="font-size:12.8000001907349px">to</span></font></div><div><span style="color:rgb(0,0,0);font-size:12.8000001907349px">a = [datetime.strptime(parts[0], '%Y-%m-%d %H:%M:%S.%f+00:00'),</span></div><div><font color="#000000"><span style="font-size:12.8000001907349px"><br></span></font></div><div><font color="#000000"><span style="font-size:12.8000001907349px">in the file </span></font><span style="color:rgb(0,0,0);font-size:12.8000001907349px">/usr/lib/python2.6/site-</span><span style="color:rgb(0,0,0);font-size:12.8000001907349px">packages/StarCluster-0.95.5-</span><span style="color:rgb(0,0,0);font-size:12.8000001907349px">py2.6.egg/starcluster/</span><span style="color:rgb(0,0,0);font-size:12.8000001907349px">balancers/sge/visualizer.py</span><font color="#000000"><span style="font-size:12.8000001907349px"><br></span></font><div><br></div><div><br></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, May 6, 2015 at 10:18 AM, Andrey Evtikhov <span dir="ltr"><<a href="mailto:Andrey_Evtikhov@epam.com" target="_blank">Andrey_Evtikhov@epam.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<p class="MsoNormal"><span style="color:black">Hi there – simplest configuration master and 1 node:<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="color:black">OS:<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Description: Ubuntu 13.04<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Release: 13.04<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Codename: raring <u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Starting load balancer (Use ctrl-c to exit)<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Maximum cluster size: 2<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Minimum cluster size: 1<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Cluster growth rate: 1 nodes/iteration<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> <u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Writing stats to file: /home/aevtikhov/.starcluster/sge/aevtikhov/sge-stats.csv<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Plotting stats to directory: /tmp<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Loading full job history<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Execution hosts: 2<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Queued jobs: 0<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Avg job duration: 0 secs<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Avg job wait time: 0 secs<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Last cluster modification time: 2015-04-30 14:28:54+0000<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Not adding nodes: already at or above maximum (2)<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Cluster was modified less than 180 seconds ago<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">>>> Waiting for cluster to stabilize...<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">!!! ERROR - Unhandled exception occured<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">Traceback (most recent call last):<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib/python2.6/site-packages/StarCluster-0.95.5-py2.6.egg/starcluster/cli.py", line 274, in main<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> sc.execute(args)<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib/python2.6/site-packages/StarCluster-0.95.5-py2.6.egg/starcluster/commands/loadbalance.py", line 115, in execute<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> lb.run(cluster)<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib/python2.6/site-packages/StarCluster-0.95.5-py2.6.egg/starcluster/balancers/sge/__init__.py", line 643, in run<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> self.visualizer.graph_all()<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib/python2.6/site-packages/StarCluster-0.95.5-py2.6.egg/starcluster/balancers/sge/visualizer.py", line 71, in graph_all<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> self.read()<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib/python2.6/site-packages/StarCluster-0.95.5-py2.6.egg/starcluster/balancers/sge/visualizer.py", line 47, in read<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> a = [datetime.strptime(parts[0], '%Y-%m-%d %H:%M:%S.%f'),<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> File "/usr/lib64/python2.6/_strptime.py", line 328, in _strptime<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> data_string[found.end():])<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">ValueError: unconverted data remains: +00:00<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black"> <u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">!!! ERROR - Oops! Looks like you've found a bug in StarCluster<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">!!! ERROR - Crash report written to: /home/aevtikhov/.starcluster/logs/crash-report-31714.txt<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">!!! ERROR - Please remove any sensitive data from the crash report<u></u><u></u></span></p>
<p class="MsoNormal"><span style="color:black">!!! ERROR - and submit it to <a href="mailto:starcluster@mit.edu" target="_blank">
<span style="color:#0563c1">starcluster@mit.edu</span></a><u></u><u></u></span></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">Nick Stong, PhD</div></div></blockquote><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">Bioinformatics Scientist </div></div></blockquote><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">Celmatix Inc.</div></div></blockquote><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">54 W. 40th</div></div></blockquote><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">New York, NY 10018</div></div><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">262-994-4152</div></div><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif"><a href="http://www.celmatix.com/" style="color:rgb(17,85,204)" target="_blank">www.celmatix.com</a></div></div><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif"><br></div></div><div style="font-family:arial,helvetica,sans-serif"><div style="font-family:arial,sans-serif">This email message and any attachments being sent by Celmatix Inc., are confidential, and may be privileged. If you are not the intended recipient, please notify us immediately—by replying to this message—and destroy all copies of this message and any attachments. Thank you.</div></div></blockquote></div></div></div></div>
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