<div dir="ltr">Rayson, this is a derivative of the Scientific Linux 6.3 AMI that was pointed to previously from the StarCluster site.<div><br></div><div style>Thanks,</div><div style>Lyn</div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Wed, Jan 22, 2014 at 12:13 PM, Rayson Ho <span dir="ltr"><<a href="mailto:raysonlogin@gmail.com" target="_blank">raysonlogin@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Which AMI did you use? Seems like it is missing some files...<br>
<br>
Rayson<br>
<br>
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<div><div class="h5"><br>
<br>
On Wed, Jan 22, 2014 at 5:10 PM, Lyn Gerner <<a href="mailto:schedulerqueen@gmail.com">schedulerqueen@gmail.com</a>> wrote:<br>
> Hi All,<br>
><br>
> I am trying to launch a 3-node cluster (using 0.94.3), and keep getting an<br>
> error during SGE install on the master, which blows the install of it and<br>
> the remaining nodes out of the water.<br>
><br>
> My starcluster config file specifies disable_queue = true and then invokes<br>
> the sge plugin with MASTER_IS_EXEC_HOST = False, so all it needs to do is<br>
> install and bring up qmaster.<br>
><br>
> The qmaster does come up, however, the cluster start keeps timing out with<br>
> the following:<br>
><br>
>>>> Installing Sun Grid Engine...<br>
> !!! ERROR - Error occured while running plugin 'sge':<br>
> !!! ERROR - remote command 'source /etc/profile && cd /opt/sge6 &&<br>
> !!! ERROR - TERM=rxvt ./inst_sge -m -noremote -auto ./ec2_sge.conf'<br>
> !!! ERROR - failed with status 1:<br>
> !!! ERROR - Reading configuration from file ./ec2_sge.conf<br>
> !!! ERROR - [H[2JInstall log can be found in: /opt/sge6/default/common/i<br>
> !!! ERROR - nstall_logs/qmaster_install_master_2014-01-22_21:55:08.log<br>
><br>
> In the install log, it's waiting for the SGE qmaster pid file to show up,<br>
> times out after 5mins, and tells me to check my autoinstall config file.<br>
><br>
> Here are the ps output, and the installation log.<br>
><br>
> root@AWS-VTMXmaster-w2b /opt/sge6/default/common/install_logs<br>
> # ps -ef|grep master<br>
> avahi 1038 1 0 20:42 ? 00:00:00 avahi-daemon: running<br>
> [master.local]<br>
> root 1442 1 0 20:43 ? 00:00:00 /usr/libexec/postfix/master<br>
> sgeadmin 1629 1 0 20:43 ? 00:00:00<br>
> /opt/sge6/bin/linux-x64/sge_qmaster<br>
> root 18277 4408 0 21:30 pts/0 00:00:00 /bin/grep --color=auto<br>
> master<br>
><br>
> root@AWS-VTMXmaster-w2b /opt/sge6/default/common/install_logs<br>
> # cat qmaster_install_master_2014-01-22_21:22:55.log<br>
> Starting qmaster installation!<br>
><br>
> Installing Grid Engine as admin user >sgeadmin<<br>
><br>
><br>
><br>
> Your $SGE_ROOT directory: /opt/sge6<br>
><br>
> Using SGE_QMASTER_PORT >63231<.<br>
><br>
> Using SGE_EXECD_PORT >63232<.<br>
><br>
> Using >default< as CELL_NAME.<br>
><br>
><br>
> Your $SGE_CLUSTER_NAME: starcluster<br>
><br>
> Using >/opt/sge6/default/spool/qmaster< as QMASTER_SPOOL_DIR.<br>
><br>
><br>
><br>
><br>
><br>
> Obviously this is not a complete Grid Engine distribution or this<br>
> is not your $SGE_ROOT directory.<br>
><br>
> Missing file or directory: start_gui_installer<br>
><br>
> Your file permissions will not be set. Exit.<br>
><br>
><br>
> Using >true< as IGNORE_FQDN_DEFAULT.<br>
> If it's >true<, the domain name will be ignored.<br>
><br>
><br>
> Making directories<br>
><br>
> Setting spooling method to dynamic<br>
> Dumping bootstrapping information<br>
> Initializing spooling database<br>
><br>
><br>
> Using >20000-20100< as gid range.<br>
> Using >/opt/sge6/default/spool< as EXECD_SPOOL_DIR.<br>
> Using ><a href="mailto:none@none.edu">none@none.edu</a>< as ADMIN_MAIL.<br>
> Adding default parallel environments (PE)<br>
><br>
><br>
><br>
> starting sge_qmaster<br>
> Reached 5min timeout, while waiting for qmaster PID file.<br>
> sge_qmaster daemon didn't start. Please check your<br>
> autoinstall configuration file! Installation failed!<br>
> "<br>
><br>
> It's this same error on every attempt, and I am using an unmodified<br>
> ec2_sge.conf file.<br>
><br>
> Appreciate any suggestions for how to get over this.<br>
><br>
> Thanks much,<br>
> Lyn<br>
><br>
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</blockquote></div><br></div>