<div dir="ltr">This is probably unrelated, but I know I had some problems with sshutils on the dev branch recently. Came down to me not deleting the old starcluster before I installed the updated dev. sshutils used to be a submodule, now it is a module. Doesn't look like the same error, but may be an easy fix.</div>
<div class="gmail_extra"><br clear="all"><div><div dir="ltr">Regards,<br><br>John C. Earls<br><br><a href="https://plus.google.com/107716712696040682614/about" target="_blank">https://plus.google.com/107716712696040682614/about</a><br>
<br>"The hard is what makes it great"<br><font color="#000000"><span style="line-height:16.34375px"><a href="http://whatshouldwecallgradschool.tumblr.com/post/64595983503/motivation" target="_blank">http://whatshouldwecallgradschool.tumblr.com/post/64595983503/motivation</a></span></font><br>
</div></div>
<br><br><div class="gmail_quote">On Wed, Dec 11, 2013 at 10:24 AM, Sergio Mafra <span dir="ltr"><<a href="mailto:sergiohmafra@gmail.com" target="_blank">sergiohmafra@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi Folks,<div><br></div><div>I was starting my tests with some new features of StarCluster using the 0.9999 version of Git when got this error with the MPICH2 plugin that always worked right.. </div><div><br>
</div><div>Any ideas?</div><div><br></div><div><div>>>> Configuring MPICH2 profile</div><div>2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%</div><div>>>> Setting MPICH2 as default MPI on all nodes</div>
<div>2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%</div><div>!!! ERROR - Error occured while running plugin 'mpich2':</div><div>!!! ERROR - error occurred in job (id=master): remote command 'source /etc/profile && update-alternatives --list mpi' failed with status 2:</div>
<div>alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.</div><div>This may be freely redistributed under the terms of the GNU Public License.</div><div><br></div><div>usage: alternatives --install <link> <name> <path> <priority></div>
<div>[--initscript <service>]</div><div>[--slave <link> <name> <path>]*</div><div>alternatives --remove <name> <path></div><div>alternatives --auto <name></div><div>alternatives --config <name></div>
<div>alternatives --display <name></div><div>alternatives --set <name> <path></div><div><br></div><div>common options: --verbose --test --help --usage --version</div><div>--altdir <directory> --admindir <directory></div>
<div>Traceback (most recent call last):</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py", line 48, in run</div><div> job.run()</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py", line 80, in run</div>
<div> r = self.method(self.args, **self.kwargs)</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py", line 32, in _update_alternatives</div><div>
mpi_choices = node.ssh.execute("update-alternatives --list mpi")</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py", line 578, in execute</div>
<div> msg, command, exit_status, out_str)</div><div>RemoteCommandFailed: remote command 'source /etc/profile && update-alternatives --list mpi' failed with status 2:</div><div>alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.</div>
<div>This may be freely redistributed under the terms of the GNU Public License.</div><div><br></div><div>usage: alternatives --install <link> <name> <path> <priority></div><div>[--initscript <service>]</div>
<div>[--slave <link> <name> <path>]*</div><div>alternatives --remove <name> <path></div><div>alternatives --auto <name></div><div>alternatives --config <name></div><div>alternatives --display <name></div>
<div>alternatives --set <name> <path></div><div><br></div><div>common options: --verbose --test --help --usage --version</div><div>--altdir <directory> --admindir <directory></div><div><br></div><div>
error occurred in job (id=node001): remote command 'source /etc/profile && update-alternatives --list mpi' failed with status 2:</div><div>alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.</div>
<div>This may be freely redistributed under the terms of the GNU Public License.</div><div><br></div><div>usage: alternatives --install <link> <name> <path> <priority></div><div>[--initscript <service>]</div>
<div>[--slave <link> <name> <path>]*</div><div>alternatives --remove <name> <path></div><div>alternatives --auto <name></div><div>alternatives --config <name></div><div>alternatives --display <name></div>
<div>alternatives --set <name> <path></div><div><br></div><div>common options: --verbose --test --help --usage --version</div><div>--altdir <directory> --admindir <directory></div><div>Traceback (most recent call last):</div>
<div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py", line 48, in run</div><div> job.run()</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py", line 80, in run</div>
<div> r = self.method(self.args, **self.kwargs)</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py", line 32, in _update_alternatives</div><div>
mpi_choices = node.ssh.execute("update-alternatives --list mpi")</div><div> File "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py", line 578, in execute</div>
<div> msg, command, exit_status, out_str)</div><div>RemoteCommandFailed: remote command 'source /etc/profile && update-alternatives --list mpi' failed with status 2:</div><div>alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.</div>
<div>This may be freely redistributed under the terms of the GNU Public License.</div><div><br></div><div>usage: alternatives --install <link> <name> <path> <priority></div><div>[--initscript <service>]</div>
<div>[--slave <link> <name> <path>]*</div><div>alternatives --remove <name> <path></div><div>alternatives --auto <name></div><div>alternatives --config <name></div><div>alternatives --display <name></div>
<div>alternatives --set <name> <path></div><div><br></div><div>common options: --verbose --test --help --usage --version</div><div>--altdir <directory> --admindir <directory></div><div><br></div><div>
<br></div><div>!!! ERROR - Oops! Looks like you've found a bug in StarCluster</div><div>!!! ERROR - Crash report written to: /home/ubuntu/.starcluster/logs/crash-report-9071.txt</div><div>!!! ERROR - Please remove any sensitive data from the crash report</div>
<div>!!! ERROR - and submit it to <a href="mailto:starcluster@mit.edu" target="_blank">starcluster@mit.edu</a></div></div><div><br></div></div>
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<br></blockquote></div><br></div>