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<div>Of course, should have thought about it... Was looking for a more complicated solution.</div>
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<div>Thanks Adam</div>
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<div>-- Marco Blanchette, Ph.D.</div>
<div>Stowers Institute for Medical Research</div>
<div>1000 East 50th Street</div>
<div>Kansas City MO 64110</div>
<div>www.stowers.org</div>
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<span style="font-weight:bold">From: </span>Adam Kraut <<a href="mailto:kraut@bioteam.net">kraut@bioteam.net</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, May 29, 2013 9:33 AM<br>
<span style="font-weight:bold">To: </span>Marco Blanchette <<a href="mailto:mab@stowers.org">mab@stowers.org</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:starcluster@mit.edu">starcluster@mit.edu</a>" <<a href="mailto:starcluster@mit.edu">starcluster@mit.edu</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [StarCluster] Starcluster SGE usage<br>
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<div>Hi Marco,</div>
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<div>This is a good case for a simple starcluster plugin. You can execute the custom qconf commands you need to create the parallel environment and add it to the default queue. Use the SGE plugin as a reference.</div>
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<div>Hope this helps,</div>
<div>Adam</div>
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<p style="color: #A0A0A8;">On Tuesday, May 28, 2013 at 8:12 PM, Blanchette, Marco wrote:</p>
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<div>I would like to revive this thread as I am in a similar situation as the</div>
<div>original author, I would like to run jobs in a parallel environment where</div>
<div>the slot allocation would not extend beyond a given node.</div>
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<div>Here is what John last wrote following a long exchange:</div>
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<div>On 10/18/2012 01:55 PM, John St. John wrote:</div>
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<div>Ok just submitted a pull request. I modified the sge template</div>
<div>"sge_pe_template" so that you can modify the allocation type in a</div>
<div>new parallel environment. I modified the SGE plugin so that it</div>
<div>makes by_node as well as ORTE, and by_node uses the $pe_slots</div>
<div>allocation type. I have tested this out with creating a cluster</div>
<div>(haven't tried adding/deleting nodes) and it seems to work. The</div>
<div>changes are pretty minimal to get here so I feel pretty confident</div>
<div>that I didn't add any new bugs.</div>
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<div>Best, John </div>
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<div>However, I don't see any trace of these modifications in the repos? Was</div>
<div>this abandoned? </div>
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<div>Could you suggest a strategy to enable the by_node parallel environment</div>
<div>and have it added to the all.q queue at init time? (I see that I can</div>
<div>initialize it with qconf ˇ©ap by_node then add it manually with qconf -mq</div>
<div>all.q)</div>
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<div>Thanks</div>
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<div>-- Marco Blanchette, Ph.D.</div>
<div>Stowers Institute for Medical Research</div>
<div>1000 East 50th Street</div>
<div>Kansas City MO 64110</div>
<div><a href="http://www.stowers.org">www.stowers.org</a></div>
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<div>Tel: 816-926-4071</div>
<div>Cell: 816-726-8419</div>
<div>Fax: 816-926-2018</div>
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