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Yeah I responded to that email while working out of a "car-office" heh
and misread the original question's intent ...<br>
<br>
I'm sure we (bioteam) can find a lot of use for the plugins/sge.py
script!<br>
<br>
Regards,<br>
Chris<br>
<br>
<br>
<br>
<blockquote style="border: 0px none;"
cite="mid:4F48056C.4010305@mit.edu" type="cite">
<div style="margin:30px 25px 10px 25px;" class="__pbConvHr"><div
style="display:table;width:100%;border-top:1px solid
#EDEEF0;padding-top:5px"> <div
style="display:table-cell;vertical-align:middle;padding-right:6px;"><img
photoaddress="jtriley@MIT.EDU" photoname="Justin Riley"
src="cid:part1.04010102.06030000@bioteam.net"
name="compose-unknown-contact.jpg" height="25px" width="25px"></div> <div
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<a moz-do-not-send="true" href="mailto:jtriley@MIT.EDU"
style="color:#737F92
!important;padding-right:6px;font-weight:bold;text-decoration:none
!important;">Justin Riley</a></div> <div
style="display:table-cell;white-space:nowrap;vertical-align:middle;">
<font color="#9FA2A5"><span style="padding-left:6px">February 24, 2012
4:47 PM</span></font></div></div></div>
<div style="color:#888888;margin-left:24px;margin-right:24px;"
__pbrmquotes="true" class="__pbConvBody"><div>-----BEGIN PGP SIGNED
MESSAGE-----<br>Hash: SHA1<br><br>Hi Chris,<br><br>By default all of the
nodes in the cluster *should* be admin, submit,<br>and exec hosts.<br><br>With
that said I'd love for folks to start customizing the new SGE<br>plugin
on git (will be released with 0.93.2 as well). You can find the<br>new
plugin in "plugins/sge.py".<br><br>Each SGE customization should be
implemented as an optional keyword<br>argument to the plugin's __init__
method - other plugin methods should<br>then read these parameters and
perform the customizations in run(),<br>on_add_node(), etc. I'm happy to
help folks get started if interested.<br><br>~Justin<br></div><div><!----><br>-----BEGIN
PGP SIGNATURE-----<br>Version: GnuPG v2.0.17 (GNU/Linux)<br>Comment:
Using GnuPG with Mozilla - <a class="moz-txt-link-freetext" href="http://enigmail.mozdev.org/">http://enigmail.mozdev.org/</a><br><br>iEYEARECAAYFAk9IBWsACgkQ4llAkMfDcrlgLACfUYrrpRYk3hPu9SUgw6w+9hRe<br>KIoAn39PejiVJf861cfT+KEYzhhaMtzS<br>=3hpo<br>-----END
PGP SIGNATURE-----<br></div></div>
<div style="margin:30px 25px 10px 25px;" class="__pbConvHr"><div
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#EDEEF0;padding-top:5px"> <div
style="display:table-cell;vertical-align:middle;padding-right:6px;"><img
photoaddress="dag@bioteam.net" photoname="Chris Dagdigian"
src="cid:part2.09020104.07000108@bioteam.net" name="postbox-contact.jpg"
height="25px" width="25px"></div> <div
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<a moz-do-not-send="true" href="mailto:dag@bioteam.net"
style="color:#737F92
!important;padding-right:6px;font-weight:bold;text-decoration:none
!important;">Chris Dagdigian</a></div> <div
style="display:table-cell;white-space:nowrap;vertical-align:middle;">
<font color="#9FA2A5"><span style="padding-left:6px">February 24, 2012
3:58 PM</span></font></div></div></div>
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__pbrmquotes="true" class="__pbConvBody">
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<br>
It is *extremely* common for all SGE nodes in a cluster to be both admin
and submit hosts. <br>
<br>
The reason for making every node a submit host is that there are cluster
workflows that often include jobs running on a node that either do new
job submissions directly or else alter things like hold_jid or the
parameters of a job array.<br>
<br>
For small clusters that are persistant, the CLI command is "qconf -as
<hostname>" to add a submit host.<br>
<br>
Starcluster uses an SGE autoinstallation template file (I think ...) to
automate the process of cluster building. Within this template file
there is a parameter where you can list out your Admin and Submit hosts.<br>
<br>
I imagine it would be pretty simple to customize or override the default
StarCluster autoinstallation file so that all your nodes become submit
host.<br>
<br>
And if that is too complicated it's pretty trivial to iterate over the
hostnames and run the "qconf -as" command ...<br>
<br>
My $.02 of course!<br>
<br>
-Chris<br>
<br>
<br>
<br>
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#888888;"><em data-name="company" data-type="var">, BioTeam Inc.</em></span></span></span>
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<font color="#9FA2A5"><span style="padding-left:6px">February 24, 2012
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<div style="color:#888888;margin-left:24px;margin-right:24px;"
__pbrmquotes="true" class="__pbConvBody"><div><!----><br>I ran into this
too and found out I had to source <br>/etc/profile.d/sge.sh. I also am
curious if there is a better solution, <br>presumably this is an
interactive vs noninteractive shell issue.<br><br>-D<br>_______________________________________________<br>StarCluster
mailing list<br><a class="moz-txt-link-abbreviated" href="mailto:StarCluster@mit.edu">StarCluster@mit.edu</a><br><a class="moz-txt-link-freetext" href="http://mailman.mit.edu/mailman/listinfo/starcluster">http://mailman.mit.edu/mailman/listinfo/starcluster</a><br></div></div>
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<font color="#9FA2A5"><span style="padding-left:6px">February 24, 2012
3:07 PM</span></font></div></div></div>
<div style="color:#888888;margin-left:24px;margin-right:24px;"
__pbrmquotes="true" class="__pbConvBody"><div>Hi,<br><br>This is more of
a best-practice question.<br><br>Let's say I am on machine A. From it,
I create a cluster. I can then<br>ssh into the "master" and launch
jobs. Can this also be done from<br>machine A directly? I know one can
do "starcluster sshmaster -u<br>sgeadmin <clustername> 'some
command'" but then I typically run into<br>environment issues. Is there
(simple) a way to make machine A an sge<br>submit host?<br><br></div></div>
</blockquote>
<br>
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data-name="title"> Principal Consultant</em></span><span style="color:
#888888;"><em data-type="var" data-name="company">, BioTeam Inc.</em></span></span></span>
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