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Update: I just tried starCluster AMI : ami-a19e71c8 (x86_64) and got
the same error. :(<br>
<br>
The config file automatically generated by StarCluster says the base
x86_64 ami is ami-a5c42dcc. Is this one newer or older than
ami-a19e71c8?<br>
<pre class="moz-signature" cols="72">Best wishes
Sincerely yours
Jianwu Wang
<a class="moz-txt-link-abbreviated" href="mailto:wangjianwu@gmail.com">wangjianwu@gmail.com</a>
</pre>
<br>
On 3/31/2011 11:33 AM, Jianwu Wang wrote:
<blockquote cite="mid:4D94C904.5020802@gmail.com" type="cite">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
Hi All,<br>
<br>
I'm new to StartCluster. Yet my current experience tells me it
is wonderful toolkit. Thanks for sharing it.<br>
<br>
I built a new AMI based on the newest starCluster AMI :
ami-a19e71c8 (x86_64). I'm trying to start a SGE cluster using
this ami and my ebs volume. The version of starCluster is version
0.91.2. But I always cannot mount /home and other directories at
worknodes. The detailed info is as below. Please help, thank!<br>
<br>
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<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">kepler:bin
jianwu$ ./starcluster start smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">StarCluster - (<a
moz-do-not-send="true" class="moz-txt-link-freetext"
href="http://web.mit.edu/starcluster">http://web.mit.edu/starcluster</a>)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Software Tools
for Academics and Researchers (STAR)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Please submit
bug reports to <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:starcluster@mit.edu">starcluster@mit.edu</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using default cluster template: smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Validating cluster template settings...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">cluster.py:766
- ERROR - volume vol-e7a0a18f is not available (status:
in-use)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">cli.py:243 -
ERROR - settings for cluster template "smallcluster" are not
valid</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">kepler:bin
jianwu$ ./starcluster start smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">StarCluster - (<a
moz-do-not-send="true" class="moz-txt-link-freetext"
href="http://web.mit.edu/starcluster">http://web.mit.edu/starcluster</a>)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Software Tools
for Academics and Researchers (STAR)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Please submit
bug reports to <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:starcluster@mit.edu">starcluster@mit.edu</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using default cluster template: smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Validating cluster template settings...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Cluster template settings are valid</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Starting cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching a 2-node cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching master node...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Master AMI: ami-92ea17fb</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Creating security group @sc-smallcluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Reservation:r-e486a389</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching worker nodes...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Node AMI: ami-92ea17fb</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Reservation:r-e686a38b</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Waiting for cluster to start.../>>> The master node
is ec2-75-101-211-51.compute-1.amazonaws.com</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Attaching volume vol-e7a0a18f to master node on /dev/sdz ...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style=""> </span></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Setting up the cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Mounting EBS volume vol-e7a0a18f on /kepler...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using private key
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa (rsa)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Creating cluster user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using private key
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa (rsa)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring scratch space for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring /etc/hosts on each node</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring NFS...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount /home failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount /opt/sge6 failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount /kepler failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring passwordless ssh for root</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring passwordless ssh for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Generating local RSA ssh keys for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Installing Sun Grid Engine...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command /opt/sge6/util/arch failed with status 127</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Done Configuring Sun Grid Engine</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">The cluster has
been started and configured. </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Login to the
master node as root by running: </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ starcluster sshmaster smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">or manually as
sgeadmin:</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ ssh -i
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa <a
moz-do-not-send="true" class="moz-txt-link-abbreviated"
href="mailto:sgeadmin@ec2-75-101-211-51.compute-1.amazonaws.com">sgeadmin@ec2-75-101-211-51.compute-1.amazonaws.com</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">When you are
finished using the cluster, run:</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ starcluster stop smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">to shutdown the
cluster and stop paying for service</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
start took 7.262 mins</span></p>
<br>
<pre class="moz-signature" cols="72">--
Best wishes
Sincerely yours
Jianwu Wang
<a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:wangjianwu@gmail.com">wangjianwu@gmail.com</a>
</pre>
</blockquote>
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