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Hi All,<br>
<br>
I'm new to StartCluster. Yet my current experience tells me it
is wonderful toolkit. Thanks for sharing it.<br>
<br>
I built a new AMI based on the newest starCluster AMI :
ami-a19e71c8 (x86_64). I'm trying to start a SGE cluster using this
ami and my ebs volume. The version of starCluster is version 0.91.2.
But I always cannot mount /home and other directories at worknodes.
The detailed info is as below. Please help, thank!<br>
<br>
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<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">kepler:bin
jianwu$ ./starcluster start
smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">StarCluster -
(<a class="moz-txt-link-freetext" href="http://web.mit.edu/starcluster">http://web.mit.edu/starcluster</a>)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Software Tools
for Academics and
Researchers (STAR)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Please submit bug
reports to
<a class="moz-txt-link-abbreviated" href="mailto:starcluster@mit.edu">starcluster@mit.edu</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using default cluster
template: smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Validating cluster template
settings...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">cluster.py:766 -
ERROR - volume
vol-e7a0a18f is not available (status: in-use)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">cli.py:243 -
ERROR - settings for cluster
template "smallcluster" are not valid</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">kepler:bin
jianwu$ ./starcluster start
smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">StarCluster -
(<a class="moz-txt-link-freetext" href="http://web.mit.edu/starcluster">http://web.mit.edu/starcluster</a>)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Software Tools
for Academics and
Researchers (STAR)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Please submit bug
reports to
<a class="moz-txt-link-abbreviated" href="mailto:starcluster@mit.edu">starcluster@mit.edu</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using default cluster
template: smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Validating cluster template
settings...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Cluster template settings
are valid</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Starting cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching a 2-node
cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching master node...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Master AMI: ami-92ea17fb</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Creating security group
@sc-smallcluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Reservation:r-e486a389</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Launching worker nodes...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>> Node
AMI: ami-92ea17fb</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Reservation:r-e686a38b</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Waiting for cluster to
start.../>>> The master node is
ec2-75-101-211-51.compute-1.amazonaws.com</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Attaching volume
vol-e7a0a18f to master node on /dev/sdz ...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style=""> </span></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Setting up the cluster...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Mounting EBS volume
vol-e7a0a18f on /kepler...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using private key
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa (rsa)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Creating cluster user:
sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Using private key
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa (rsa)</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring scratch space
for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring /etc/hosts on
each node</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring NFS...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount /home
failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount
/opt/sge6 failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command mount
/kepler failed with status 32</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring passwordless ssh
for root</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Configuring passwordless ssh
for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Generating local RSA ssh
keys for user: sgeadmin</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
Installing Sun Grid
Engine...</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">ssh.py:245 -
ERROR - command
/opt/sge6/util/arch failed with status 127</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>> Done
Configuring Sun Grid
Engine</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">The cluster has
been started and
configured. </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">Login to the
master node as root by
running: </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ starcluster sshmaster smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">or manually as
sgeadmin:</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ ssh -i
/Users/jianwu/.starcluster/jianwu-ami-keypair.rsa
<a class="moz-txt-link-abbreviated" href="mailto:sgeadmin@ec2-75-101-211-51.compute-1.amazonaws.com">sgeadmin@ec2-75-101-211-51.compute-1.amazonaws.com</a></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">When you are
finished using the cluster,
run:</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span>$ starcluster stop smallcluster</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">to shutdown the
cluster and stop paying
for service</span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"> </span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";"><span style="">
</span></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; line-height:
normal;"><span style="font-size: 16pt; font-family:
"Helvetica","sans-serif";">>>>
start took 7.262 mins</span></p>
<br>
<pre class="moz-signature" cols="72">--
Best wishes
Sincerely yours
Jianwu Wang
<a class="moz-txt-link-abbreviated" href="mailto:wangjianwu@gmail.com">wangjianwu@gmail.com</a>
</pre>
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