[StarCluster] StarCluster newbie question

Boris Hayete boris at borisland.com
Sat Mar 28 13:57:17 EDT 2020


Hello!

I'm trying to configure starcluster as per instructions here:

https://www.bioconductor.org/help/bioconductor-cloud-ami/#first-time-steps

I've gotten reasonably far: when I run starcluster start smallcluster, 
it runs for about 30 seconds before crashing with the following obscure 
error.  Any tips on where to start?  I thought it was related to region 
setting but everyting *seems* fine.

Boris

StarCluster - (http://star.mit.edu/cluster) (v. 0.95.6)
Software Tools for Academics and Researchers (STAR)
Please submit bug reports to starcluster at mit.edu

!!! ERROR - Connection error:
Traceback (most recent call last):
   File "/usr/local/lib/python2.7/dist-packages/starcluster/cli.py", 
line 274, in main
     sc.execute(args)
   File 
"/usr/local/lib/python2.7/dist-packages/starcluster/commands/start.py", 
line 189, in execute
     scluster = self.cm.get_cluster_group_or_none(tag)
   File "/usr/local/lib/python2.7/dist-packages/starcluster/cluster.py", 
line 244, in get_cluster_group_or_none
     return self.get_cluster_security_group(group_name)
   File "/usr/local/lib/python2.7/dist-packages/starcluster/cluster.py", 
line 240, in get_cluster_security_group
     return self.ec2.get_security_group(gname)
   File 
"/usr/local/lib/python2.7/dist-packages/starcluster/awsutils.py", line 
357, in get_security_group
     filters={'group-name': groupname})[0]
   File 
"/usr/local/lib/python2.7/dist-packages/starcluster/awsutils.py", line 
369, in get_security_groups
     return self.conn.get_all_security_groups(filters=filters)
   File "/usr/local/lib/python2.7/dist-packages/boto/ec2/connection.py", 
line 2984, in get_all_security_groups
     [('item', SecurityGroup)], verb='POST')
   File "/usr/local/lib/python2.7/dist-packages/boto/connection.py", 
line 1170, in get_list
     response = self.make_request(action, params, path, verb)
   File "/usr/local/lib/python2.7/dist-packages/boto/connection.py", 
line 1116, in make_request
     return self._mexe(http_request)
   File "/usr/local/lib/python2.7/dist-packages/boto/connection.py", 
line 1030, in _mexe
     raise ex
gaierror: [Errno -2] Name or service not known
!!! ERROR - Check your internet connection?



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