[StarCluster] StarCluster Digest, Vol 66, Issue 7

Philip Montgomery pmontgom at broadinstitute.org
Fri Feb 20 12:53:23 EST 2015


I don't recall seeing any network errors, but I do regularly install R on
top of starcluster AMIs.   I have gotten errors trying to update packages,
I'm guessing because the last ubuntu release that there's starcluster AMIs
(13.04) for is no longer supported by ubuntu.  So, I use the AMI for ubuntu
12.04 as my starting point.

Attached is a script that I run which installs R and the various packages
that I use.  I then image the instance to a new AMI so that I don't need to
repeat the process ever time a node comes online.

Not entirely clear if the problem you're getting is one I've hit, but
sending along my script in case it happens to help.

Thanks,
Phil


On Fri, Feb 20, 2015 at 12:34 PM, <starcluster-request at mit.edu> wrote:

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>    1. cannot install on master node (Vas Ku)
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> Message: 1
> Date: Fri, 20 Feb 2015 16:53:51 +0000
> From: Vas Ku <vaskum.tech at gmail.com>
> Subject: [StarCluster] cannot install on master node
> To: starcluster at mit.edu
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> vOP_ABVjLyrRQg at mail.gmail.com>
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> Apologies for this rather novice question. I have finally been able to get
> star cluster installed and running after firefighting with different AMI's
> and thing. But now I am stuck with this issue where I need to install R and
> when i do apt-get, the networks seems to be dead. Not even ping works (just
> hangs any ip and dies with 'failed connection timeout' ) . Must be
> something obvious I haven't or have done with my config setting. Could you
> please let me know what diagnostics could I perform?
>
> Thanks
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