[StarCluster] SGE Execution errors - Ubuntu 12.04 Official

[Rayson Ho]

Are starenv & remove_doubleqoutes the bash functions defined in your shell
environment?

Rayson

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On Mon, Nov 17, 2014 at 2:06 PM, Stephen Smith <stephen.smith at electrolux.com
> wrote:

> Hello,
>
> I'm getting the following errors when submitting a job to SGE via qsub.
> I'm running the 12.04 Ubuntu starcluster AMI, modified only with the
> installation of the software I would like to run.  I received these same
> errors with a CentOS7 AMI I built from scratch as well - I'm not sure what
> I'm missing.  Any thoughts as to the cause?
>
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 11:
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/starenv: No
> such file or directory
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 24:
> reset_env: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 28:
> init_timers: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 29:
> start_finetimer: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 33:
> stop_timer: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
> remove_doublequotes: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 81:
> start_timer: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
> /opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
> substitute_spaceescape: command not found
>
>
> Thanks in advance,
> Stephen
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