[StarCluster] Unable to mount ebs volume

Jerry Lee, GW/US Jerry.Lee at genewiz.com
Mon Apr 15 18:11:38 EDT 2013


Hi,

 

I am a beginner of using the StarCluster. I created a ebs volme via
Amazon AWS and configure it on the config file to use it for my cluster,
but no matter what I do, it doesn't automatically mount the ebs volume
onto the cluster. Please help.

 

[cluster jerrycluster]

EXTENDS = smallcluster

VOLUMES = testdata

 

[volume testdata]

VOLUME_ID=vol-a0fe24f9

MOUNT_PATH=/data

 

>>> Waiting for cluster to come up... (updating every 30s)

>>> Waiting for instances to activate...

>>> Waiting for all nodes to be in a 'running' state...

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100%

>>> Waiting for SSH to come up on all nodes...

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100%

>>> Waiting for cluster to come up took 1.847 mins

>>> The master node is ec2-54-234-229-206.compute-1.amazonaws.com

>>> Setting up the cluster...

>>> Configuring hostnames...

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100%

>>> Creating cluster user: None (uid: 1001, gid: 1001)

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>>> Configuring scratch space for user(s): sgeadmin

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>>> Configuring /etc/hosts on each node

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>>> Starting NFS server on master

>>> Configuring NFS exports path(s):

/home

>>> Mounting all NFS export path(s) on 1 worker node(s)

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>>> Setting up NFS took 0.073 mins

>>> Configuring passwordless ssh for root

>>> Configuring passwordless ssh for sgeadmin

>>> Shutting down threads...

20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%

>>> Configuring SGE...

>>> Configuring NFS exports path(s):

/opt/sge6

>>> Mounting all NFS export path(s) on 1 worker node(s)

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>>> Setting up NFS took 0.020 mins

>>> Installing Sun Grid Engine...

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>>> Creating SGE parallel environment 'orte'

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>>> Adding parallel environment 'orte' to queue 'all.q'

>>> Shutting down threads...

20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%

>>> Configuring cluster took 1.325 mins

>>> Starting cluster took 3.197 mins

 

 

Thanks,

 

Jerry Lee

 

Jerry Lee

Assistant Manager of Global Infrastructure

GENEWIZ Inc.

40 Cragwood Road. Suite 201

South Plainfield, NJ 07080

Phone: 908-222-0711 ext. 3379

Fax: 908-333-4511 

jerry.lee at genewiz.com <mailto:jerry.lee at genewiz.com> 

www.genewiz.com <http://www.genewiz.com/> 

 

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