[StarCluster] libgmp issue with StarCluster 0.9.3 on Ubuntu 10.04

[Justin Riley]

This warning comes from PyCrypto and the fix is to install libgmp 5.x
and then reinstall pycrypto.

Unfortunately it looks like in Ubuntu 10.04 (Lucid) the libgmp version
is 4.3.2. You could either try installing libgmp 5.x manually either by
building from source or downloading a deb from some where or you might
consider upgrading to Ubuntu 11.10 (Oneiric) which has libgmp 5.x. It
*might* be possible to simply download the latest libgmp debs from
Oneiric and install using dpkg....

HTH,

~Justin

On 1/14/12 1:54 PM, Wei Tao wrote:
> Hi all,
>
> For StarCluster v0.9.3, after I installed gmp-5.0.2 on Ubuntu 10.04,
> adn rebuild StarCluster, I still get the following warning when I run
> StarCluster:
>
> ubuntu at ip-10-83-81-254:~$ starcluster --help
> /usr/local/lib/python2.6/dist-packages/pycrypto-2.4.1-py2.6-linux-x86_64.egg/Crypto/Util/number.py:57:
> PowmInsecureWarning: Not using mpz_powm_sec.  You should rebuild using
> libgmp >= 5 to avoid timing attack vulnerability.
>   _warn("Not using mpz_powm_sec.  You should rebuild using libgmp >= 5
> to avoid timing attack vulnerability.", PowmInsecureWarning)
> StarCluster - (http://web.mit.edu/starcluster) (v. 0.93)
>
> What else should I do to get rid off the warning message?
>
> -- 
> Wei Tao, Ph.D.
> TSI Biocomputing LLC
> 617-564-0934
>
>
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> StarCluster at mit.edu
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