[Starcluster] NumPy and SciPy tests fail on Ubuntu 9.10 Karmic

[Damian Eads]

Hi Justin,

I decided to run my usual computer vision regressions but before I got
there, I ran the NumPy and SciPy regression suite.

root at domU-12-31-38-01-58-B1:/data# nosetests numpy scipy
EE
======================================================================
ERROR: Failure: ImportError (/usr/lib/libptcblas.so: undefined symbol:
ATL_cpttrsm)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
368, in loadTestsFromName
    module = resolve_name(addr.module)
  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
334, in resolve_name
    module = __import__('.'.join(parts_copy))
  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
line 130, in <module>
    import add_newdocs
  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
line 9, in <module>
    from lib import add_newdoc
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
line 13, in <module>
    from polynomial import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
line 18, in <module>
    from numpy.linalg import eigvals, lstsq
  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/__init__.py",
line 47, in <module>
    from linalg import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/linalg.py",
line 22, in <module>
    from numpy.linalg import lapack_lite
ImportError: /usr/lib/libptcblas.so: undefined symbol: ATL_cpttrsm

======================================================================
ERROR: Failure: AttributeError ('module' object has no attribute 'core')
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
368, in loadTestsFromName
    module = resolve_name(addr.module)
  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
334, in resolve_name
    module = __import__('.'.join(parts_copy))
  File "/usr/local/lib/python2.6/dist-packages/scipy/__init__.py",
line 11, in <module>
    from numpy import show_config as show_numpy_config
  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
line 130, in <module>
    import add_newdocs
  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
line 9, in <module>
    from lib import add_newdoc
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
line 13, in <module>
    from polynomial import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
line 11, in <module>
    import numpy.core.numeric as NX
AttributeError: 'module' object has no attribute 'core'

----------------------------------------------------------------------
Ran 2 tests in 0.001s

FAILED (errors=2)
root at domU-12-31-38-01-58-B1:/data#

Is there a reason for not using the Ubuntu packages for numpy and scipy?

Just curious.

Thanks,

Damian



-----------------------------------------------------
Damian Eads                           Ph.D. Candidate
University of California             Computer Science
1156 High Street         Machine Learning Lab, E2-489
Santa Cruz, CA 95064    http://www.soe.ucsc.edu/~eads