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<p>Dear all,</p>
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</p>
<p>MISO does not support mixed read lengths. I would like to trim my reads to a uniform length and re-run MISO without doing the mapping again as I'm not the one who's done the mapping originally and the bioinformatician is not here anymore. So I would like
to directly trim the BAM files.</p>
<p>I've already tested GATK but the soft clipping is not enough for MISO and it still detects different reads length. The hard clipping option is not working correctly.</p>
<p>I tried other tools but to no avail.</p>
<p><br>
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<p>Could you please help me with that ? Does anybody know a tools able to do that ? If possible, I would like to not run miso for each read length, I don't see how to regroup all results afterward.</p>
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<p>Obviously, I've never used MISO before <span>😅<span>😊</span></span></p>
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<p>Thanks a lot for your help.</p>
<p>Best regards,</p>
<p>Céline</p>
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