<div dir="ltr"><div><div><div>Hi,<br><br></div>Whe trying to test sashimi_plot I am getting a errors and a plot without MISO estimates? Any help is appreciated.<br><br></div>Thanks,<br></div>JJ<br><div><div><br></div><div>part of the terminal output (full output is attached)<br></div><div><div><br>miso_prefix: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data<br>Searching for MISO files in: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT1<br>  - Looking for chromosome chr17 directories<br>Error: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT1 not a directory.<br>Error: Could not find MISO output files for sample heartWT1 (after searching in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT1 and its subdirectories). Are you sure MISO output files are present in that directory?<br>Searching for MISO files in: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT2<br>  - Looking for chromosome chr17 directories<br>Error: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT2 not a directory.<br>Error: Could not find MISO output files for sample heartWT2 (after searching in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartWT2 and its subdirectories). Are you sure MISO output files are present in that directory?<br>Searching for MISO files in: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOa<br>  - Looking for chromosome chr17 directories<br>Error: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOa not a directory.<br>Error: Could not find MISO output files for sample heartKOa (after searching in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOa and its subdirectories). Are you sure MISO output files are present in that directory?<br>Searching for MISO files in: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOb<br>  - Looking for chromosome chr17 directories<br>Error: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOb not a directory.<br>Error: Could not find MISO output files for sample heartKOb (after searching in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-data/miso-data/heartKOb and its subdirectories). Are you sure MISO output files are present in that directory?<br>Reading dimensions from settings...<br> - Height: 5.00<br> - Width: 7.00<br>Plotting read densities and MISO estimates along event...<br>  - Event: chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-<br>Setting up plot using dimensions:  [7.0, 5.0]<br>Using intron scale  30.0<br>Using exon scale  4.0<br>Reading sample label: heartWT1.sorted.bam<br>Processing BAM: ./test-data/bam-data/heartWT1.sorted.bam<br>Warning: MISO file  not found<br>Loading MISO file: <br>Posterior plot failed.<br>Reading sample label: heartWT2.sorted.bam<br>Processing BAM: ./test-data/bam-data/heartWT2.sorted.bam<br>Warning: MISO file  not found<br>Loading MISO file: <br>Posterior plot failed.<br>Reading sample label: heartKOa.sorted.bam<br>Processing BAM: ./test-data/bam-data/heartKOa.sorted.bam<br>Warning: MISO file  not found<br>Loading MISO file: <br>Posterior plot failed.<br>Reading sample label: heartKOb.sorted.bam<br>Processing BAM: ./test-data/bam-data/heartKOb.sorted.bam<br>Warning: MISO file  not found<br>Loading MISO file: <br>Posterior plot failed.<br>Saving plot to: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/misopy/sashimi_plot/test-plot/chr17:45816186:45816265:-@chr17:45815912:45815950:-@chr17:45814875:45814965:-.pdf<br></div></div></div></div>